mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 23.1% | 408.3 / 131.9 | 243 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 208 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1396537 = | NA (NA) | 37 (0.260) | 11/288 | 16.4 | 21.7% | noncoding (494/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428270 | 139 (0.930) | noncoding (525/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 3635910 = | 345 (2.310) | 11 (0.080) | 9/276 | 17.0 | 3.4% | intergenic (+17/+298) | yhiM/yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
| ? | NC_000913 | 3635946 = | 315 (2.300) | intergenic (+53/+262) | yhiM/yhiN | acid resistance protein, inner membrane/putative oxidoreductase | |||||
| * | ? | NC_000913 | = 1428264 | NA (NA) | 36 (0.250) | 10/288 | 17.0 | 77.3% | noncoding (531/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066866 | 11 (0.070) | noncoding (488/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2327312 | 148 (0.990) | 8 (0.060) | 8/274 | 17.6 | 5.6% | intergenic (+19/+55) | atoB/yfaP | acetyl‑CoA acetyltransferase/DUF2135 family protein, putative host defense protein |
| ? | NC_000913 | = 2327320 | 135 (0.990) | intergenic (+27/+47) | atoB/yfaP | acetyl‑CoA acetyltransferase/DUF2135 family protein, putative host defense protein | |||||
| * | ? | NC_000913 | 4201782 = | 191 (1.280) | 9 (0.070) | 7/266 | 17.9 | 5.2% | intergenic (‑94/‑144) | zraP/zraS | Zn‑dependent periplasmic chaperone/sensory histidine kinase in two‑component regulatory system with ZraR |
| ? | NC_000913 | 4201828 = | 160 (1.210) | intergenic (‑140/‑98) | zraP/zraS | Zn‑dependent periplasmic chaperone/sensory histidine kinase in two‑component regulatory system with ZraR | |||||
| * | ? | NC_000913 | = 315646 | NA (NA) | 9 (0.060) | 8/290 | 18.4 | NA | noncoding (418/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315665 | NA (NA) | noncoding (437/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 4542682 = | 155 (1.040) | 7 (0.050) | 7/282 | 18.7 | 4.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 165 (1.180) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 85318 = | 155 (1.040) | 9 (0.060) | 7/282 | 18.7 | 5.8% | intergenic (+6/‑312) | leuO/ilvI | global transcription factor/acetolactate synthase 3 large subunit |
| ? | NC_000913 | 85358 = | 149 (1.060) | intergenic (+46/‑272) | leuO/ilvI | global transcription factor/acetolactate synthase 3 large subunit | |||||
| * | ? | NC_000913 | = 2904224 | 215 (1.440) | 4 (0.030) | 4/244 | 19.2 | 2.2% | intergenic (+850/+523) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | NC_000913 | 2904347 = | 175 (1.440) | intergenic (+973/+400) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||
| * | ? | NC_000913 | = 2700568 | 152 (1.020) | 5 (0.040) | 5/262 | 19.3 | 3.7% | noncoding (49/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913 | = 2700581 | 131 (1.010) | noncoding (62/77 nt) | ohsC | sRNA antisense regulator of shoB toxin | |||||