New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5594119	44 (0.790)	5 (0.110)	5/220	6.2	11.6%	intergenic (‑66/+79)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	= 5594156	41 (0.930)					intergenic (‑103/+42)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTC  >  NC_002947/5593971‑5594266                                                                                                                                                       |                                                                                                                                                    aGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑aa                                                                                                                                                     >  5:222189/1‑149 (MQ=255)     aaaaCAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACAcc                                                                                                                                                 <  6:342569/149‑1 (MQ=255)       aaCAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGGCCGCG‑AACAcccg                                                                                                                                               >  5:305058/1‑147 (MQ=255)        aCAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGc                                                                                                                                              <  5:293727/149‑1 (MQ=255)             tCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGGCCGCG‑CACACCGGCAAAGc                                                                                                                                         >  1:322844/1‑149 (MQ=255)             tCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGc                                                                                                                                         <  1:153351/149‑1 (MQ=255)              cgcgAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGcc                                                                                                                                        >  1:103936/1‑149 (MQ=255)                 gAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGt                                                                                                                                     <  6:222189/149‑1 (MQ=255)                 gAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGCAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGGGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGt                                                                                                                                     <  5:233371/149‑1 (MQ=255)                  aGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTg                                                                                                                                    <  2:233955/149‑1 (MQ=255)                    cACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGcc                                                                                                                                  <  6:224613/149‑1 (MQ=255)                    cACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGc                                                                                                                                   >  7:187157/1‑148 (MQ=255)                        gtaaaTGCGCTGCTGGATGGGGTTTGGATGGTCGGGATAGAACTGGGTGGGTGATGTCATGGTCATTTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCGTAACACCGGCAAAGCCGGTGCCATg                                                                                                                               <  7:54621/147‑1 (MQ=38)                                    ctgGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGtgc                                                                                                                    <  7:304012/147‑1 (MQ=255)                                          ggggATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTTCTTcg                                                                                                            >  7:146000/1‑149 (MQ=255)                                             gATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGcc                                                                                                                                  <  7:318271/124‑1 (MQ=255)                                               ttGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCGTACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGc                                                                                                       <  4:229053/149‑1 (MQ=255)                                                        cGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCAAGCACCGCAGTGCTTGCTTAGCGGGCAAGCCCGca                                                                                              >  3:141425/1‑148 (MQ=255)                                                                  ctggctggTTGAGGTCATGGTCATGGCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCGGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGt                                                                                    <  6:305058/149‑1 (MQ=255)                                                                  ctggctggGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCgg                                                                                                         <  4:153301/128‑1 (MQ=255)                                                                  ctggctggGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCgg                                                                                                         >  3:153301/1‑128 (MQ=255)                                                                            gATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGtgctgc                                                                          >  7:181603/1‑149 (MQ=255)                                                                              tGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCCAAGGGTAAGGTGGTGCgg                                                                        >  5:106614/1‑149 (MQ=255)                                                                               gtcatggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCTCTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCgg                                                                        >  1:82931/1‑149 (MQ=255)                                                                               gtcatggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGtgc                                                                                                                    >  2:265510/1‑104 (MQ=255)                                                                                tcctggtcatgGCCGCAGGAGTGATGTTAAGGGCCATACCCCACC‑CTGGGGGAGCGGGCTCGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGt                                                                       <  3:308855/145‑1 (MQ=25)                                                                                 catggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTTCCCCCG‑AACACCGGCAAAGCCCGTGCCATGCACCCCAGTGCTTGCTTAGCGGGCAAGCCCCCTCCCACAGGGTAAGGTGCTGCgggt                                                                      >  3:370272/1‑146 (MQ=38)                                                                                  atggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTa                                                                    >  7:6347/1‑149 (MQ=255)                                                                                    ggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGa                                                                  >  2:52143/1‑149 (MQ=255)                                                                                           tCCGCTGGTTTGATGTTACGGGGCATACACCACC‑CTGGGGTTGGGGGGGTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCCCCGCCGTGCTTGCTGCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgtg                                                           <  6:106614/149‑1 (MQ=21)                                                                                             cGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCgg                                                                                                                                      >  6:322486/1‑72 (MQ=255)                                                                                             cGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCCGTGCCATGCACCGCAGTGCGTGCTTAGCGGGGAAGCCCGCGCCCCCAGGGTAAGGTGCTGCGGTTTAGACTTTGGGGt                                                         >  7:317699/1‑149 (MQ=37)                                                                                              gCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGt                                                         >  7:81411/1‑148 (MQ=255)                                                                                                                       accacc‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGc                                    <  1:225598/144‑1 (MQ=255)                                                                                                                       accacc‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTAGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGGTTAGACTTTGTGGTACAGCTGGCTGCCTTACGGGc                                    >  2:225598/1‑144 (MQ=255)                                                                                                                          acc‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCACCCACAg                                                                                       >  7:307074/1‑90 (MQ=255)                                                                                                                                 tgGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGcc                      >  6:365185/1‑149 (MQ=255)                                                                                                                                            ttGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAATGTGCTGCTGTTTAGACTTTGTGGTAGAGCTGGCTGCCTTc                                         <  5:301624/119‑1 (MQ=255)                                                                                                                                            ttGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGCGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGCCTGCCTTc                                         >  6:301624/1‑119 (MQ=255)                                                                                                                                              gCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGc         >  5:87008/1‑149 (MQ=255)                                                                                                                                                ccGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGtgctg                                                                           <  4:108091/81‑1 (MQ=255)                                                                                                                                                ccGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGtgctg                                                                           >  3:108091/1‑81 (MQ=255)                                                                                                                                                ccGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgt                                                            <  6:67106/96‑1 (MQ=255)                                                                                                                                                ccGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgt                                                            >  5:67106/1‑96 (MQ=255)                                                                                                                                                       acacCGGAAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTc  <  2:103936/148‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                    AGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCG‑AACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTC  >  NC_002947/5593971‑5594266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.