New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5594119	44 (0.790)	5 (0.110)	5/220	6.2	11.6%	intergenic (‑66/+79)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	= 5594156	41 (0.930)					intergenic (‑103/+42)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCG  >  NC_002947/5594012‑5594300                                                                                                                                                  |                                                                                                                                                 ggggATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTTCTTcg                                                                                                                                              >  7:146000/1‑149 (MQ=255)      ttGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCGTACACCACC‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGc                                                                                                                                         <  4:229053/149‑1 (MQ=255)               cGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCAAGCACCGCAGTGCTTGCTTAGCGGGCAAGCCCGca                                                                                                                                >  3:141425/1‑148 (MQ=255)                         ctggctggTTGAGGTCATGGTCATGGCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCGGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGt                                                                                                                      <  6:305058/149‑1 (MQ=255)                         ctggctggGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCgg                                                                                                                                           >  3:153301/1‑128 (MQ=255)                         ctggctggGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCgg                                                                                                                                           <  4:153301/128‑1 (MQ=255)                                   gATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGtgctgc                                                                                                            >  7:181603/1‑149 (MQ=255)                                     tGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCCAAGGGTAAGGTGGTGCgg                                                                                                          >  5:106614/1‑149 (MQ=255)                                      gtcatggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCTCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCgg                                                                                                          >  1:82931/1‑149 (MQ=255)                                       tcctggtcatgGCCGCAGGAGTGATGTTAAGGGCCATACCCCACC‑CTGGGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGt                                                                                                         <  3:308855/145‑1 (MQ=25)                                        catggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTTCCCCCGAACACCGGCAAAGCCCGTGCCATGCACCCCAGTGCTTGCTTAGCGGGCAAGCCCCCTCCCACAGGGTAAGGTGCTGCgggt                                                                                                        >  3:370272/1‑146 (MQ=38)                                         atggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTa                                                                                                      >  7:6347/1‑149 (MQ=255)                                           ggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGa                                                                                                    >  2:52143/1‑149 (MQ=255)                                                  tCCGCTGGTTTGATGTTACGGGGCATACACCACC‑CTGGGGTTGGGGGGGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCCCCGCCGTGCTTGCTGCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgtg                                                                                             <  6:106614/149‑1 (MQ=21)                                                    cGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCCGTGCCATGCACCGCAGTGCGTGCTTAGCGGGGAAGCCCGCGCCCCCAGGGTAAGGTGCTGCGGTTTAGACTTTGGGGt                                                                                           >  7:317699/1‑149 (MQ=37)                                                     gCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGt                                                                                           >  7:81411/1‑148 (MQ=255)                                                                              accacc‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGc                                                                      <  1:225598/144‑1 (MQ=255)                                                                              accacc‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTAGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGGTTAGACTTTGTGGTACAGCTGGCTGCCTTACGGGc                                                                      >  2:225598/1‑144 (MQ=255)                                                                                 acc‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCACCCACAg                                                                                                                         >  7:307074/1‑90 (MQ=255)                                                                                        tgGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGcc                                                        >  6:365185/1‑149 (MQ=255)                                                                                                   ttGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAATGTGCTGCTGTTTAGACTTTGTGGTAGAGCTGGCTGCCTTc                                                                           <  5:301624/119‑1 (MQ=255)                                                                                                   ttGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGCGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGCCTGCCTTc                                                                           >  6:301624/1‑119 (MQ=255)                                                                                                     gCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGc                                           >  5:87008/1‑149 (MQ=255)                                                                                                       ccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGtgctg                                                                                                             >  3:108091/1‑81 (MQ=255)                                                                                                       ccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGtgctg                                                                                                             <  4:108091/81‑1 (MQ=255)                                                                                                       ccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgt                                                                                              <  6:67106/96‑1 (MQ=255)                                                                                                       ccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgt                                                                                              >  5:67106/1‑96 (MQ=255)                                                                                                         catggcacCGGCTTTGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGcc                                          >  7:29676/6‑146 (MQ=255)                                                                                                             acacCGGAAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTc                                    <  2:103936/148‑1 (MQ=255)                                                                                                                 cGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGc                                           >  3:85956/1‑137 (MQ=255)                                                                                                                 cGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGc                                           <  4:85956/137‑1 (MQ=255)                                                                                                                  ggCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTg                                                                        >  7:209368/1‑107 (MQ=255)                                                                                                                       aGCCGGTGCCATGCAGCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTc                                                                           <  7:251709/99‑1 (MQ=255)                                                                                                                                 aTGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGt                              <  2:273365/134‑1 (MQ=255)                                                                                                                                 aTGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGt                              >  1:273365/1‑134 (MQ=255)                                                                                                                                 aTGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTc               >  2:65169/1‑149 (MQ=255)                                                                                                                                    cACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGAt            >  3:251392/1‑149 (MQ=255)                                                                                                                                     aCCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATc           >  4:192571/1‑149 (MQ=255)                                                                                                                                       cGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCtt         >  7:138563/1‑149 (MQ=255)                                                                                                                                        gCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTg        <  1:52143/149‑1 (MQ=255)                                                                                                                                        gCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTg        <  2:82931/149‑1 (MQ=255)                                                                                                                                         cAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTgg       <  6:87008/149‑1 (MQ=255)                                                                                                                                          aGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGAcc                                >  3:166522/1‑123 (MQ=255)                                                                                                                                          aGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGAcc                                <  4:166522/123‑1 (MQ=255)                                                                                                                                             gcttgcttCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGc   >  7:182908/1‑149 (MQ=255)                                                                                                                                              cttgcttCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCg  >  5:219231/1‑149 (MQ=255)                                                                                                                                               ttgcttCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAgctgg                                                                                   <  7:352739/67‑1 (MQ=255)                                                                                                                                                 gcttCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGAt            >  7:33759/1‑136 (MQ=255)                                                                                                                                                  |                                                                                                                                                 GGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC‑CTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCG  >  NC_002947/5594012‑5594300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.