New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1114894	46 (0.830)	8 (0.180)	6/226	5.9	17.8%	intergenic (‑88/+91)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	= 1114920	36 (0.790)					intergenic (‑114/+65)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCT  >  NC_002947/1114775‑1115067                                                                                                                                                   |                                                                                                                                                       cgcgGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTc                                                                                                                                                      <  2:119535/148‑1 (MQ=255)  gcgGGTACAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCt                                                                                                                                                    >  2:21005/1‑149 (MQ=255)       tGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAGGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTggg                                                                                                                                               <  3:59629/149‑1 (MQ=255)        gCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTgg                                                                                                                                                >  6:172406/1‑147 (MQ=255)          aGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGc                                                                                                                                            <  1:191763/149‑1 (MQ=18)          aGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCACTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGc                                                                                                                                            >  3:350796/1‑149 (MQ=255)           gggtgggtTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCg                                                                                                                                           <  1:170628/149‑1 (MQ=255)           gggtgggtTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCg                                                                                                                                           <  5:195662/149‑1 (MQ=255)                ggtTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCtt                                                                                                                                      >  5:156689/1‑149 (MQ=255)                      ttCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTgtgttg                                                                                                                                <  1:21005/149‑3 (MQ=255)                        cGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGCGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTcgc                                                                                                                               <  1:305321/148‑1 (MQ=255)                         ggggTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTcgcg                                                                                                                              >  5:185023/1‑148 (MQ=255)                            gTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTc                                                                                                                                 >  4:229311/1‑142 (MQ=255)                            gTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTc                                                                                                                                 <  3:229311/142‑1 (MQ=255)                                tGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGcc                                                                                                                      <  2:228325/149‑1 (MQ=255)                                 ggCTGTGTCTAGCCCTTTACGAGGGGTGGGTTGAAGACCCTGGGGCTGCTGCGCAGCCTTTTTGCTACACATGGCCTCTCCAAGAGTTGGGTGGG‑GCGTTGAAGGTTGGCGCGGTCCTGTGGGAGGGGCCTTGTGTCGCGAAAGGGcc                                                                                                                      <  4:350796/148‑1 (MQ=255)                                 ggCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTtgt                                                                                                                                    <  2:221291/134‑1 (MQ=255)                                 ggCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTtgt                                                                                                                                    >  1:221291/1‑134 (MQ=255)                                 ggCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCg                                                                                                                     >  2:26854/1‑149 (MQ=255)                                 ggCAGTGTCCAGCCCTATACGAGCGCTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGCAGGGTGGC‑GCCTTGAAGGTTGGCGCCCTCCTGTGGGAGCGGCCTAGTGTCGCGAAAGGGcc                                                                                                                      >  7:240011/1‑148 (MQ=255)                                          cAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGc                                                                                                         <  5:267153/149‑1 (MQ=255)                                           aGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGcc                                                                                                        >  5:22502/1‑149 (MQ=255)                                               cTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGt                                                                                                                    <  7:91859/136‑1 (MQ=255)                                                         ggTGTCTTGAAGACCCTGTGGCTGCTGCGCAGCCGTTTTGCGAAACAAGGCCGCTCCCACAGGTGGGTGGC‑GCCTTGATTGTGGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTctctct                                                                                          <  6:156689/149‑1 (MQ=38)                                                          gTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTa                                                                                         <  5:172406/149‑1 (MQ=255)                                                                       ccTGGGGCTGCTGCTCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAgcgc                                                                            >  7:259408/1‑149 (MQ=255)                                                                                         cccTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCAtgctg                                                          <  6:185023/149‑1 (MQ=255)                                                                                            tttcGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTc                                                       >  6:349287/1‑149 (MQ=255)                                                                                              ttGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCg                                                      <  5:165117/148‑1 (MQ=255)                                                                                              tggCGACACACGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTGGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCg                                                      <  7:319124/146‑1 (MQ=255)                                                                                                      caAGGCCGCGCCCACAGGAGGGGGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTg                                             <  7:357330/149‑1 (MQ=255)                                                                                                           ccGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAg                                        >  2:336110/1‑149 (MQ=255)                                                                                                               tCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGCCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGcc                                    >  3:178582/1‑149 (MQ=255)                                                                                                                cccACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCt                                   >  3:275178/1‑149 (MQ=255)                                                                                                                   acaGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATTCTGCTCGGTGAAGTTGGCCAGGGCCTGtt                                <  1:26854/149‑1 (MQ=255)                                                                                                                   acaGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGtt                                >  4:4152/1‑149 (MQ=255)                                                                                                                    caGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTTAGACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGAGAAGTTGGCCAGGGCCTg                                  >  1:110762/1‑149 (MQ=255)                                                                                                                    caGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTc                               >  3:247803/1‑149 (MQ=255)                                                                                                                            tGGC‑GCCTTTAAGGTTGGCGCCGTCCTGTGGGTGGGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCgg                       <  6:22502/149‑1 (MQ=255)                                                                                                                             ggC‑GCCTTGACGGTGGGCCCCGGCCGGGGGGAGCGGCCTTGGGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGc                      <  4:69376/149‑1 (MQ=255)                                                                                                                              gc‑gcCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAg                                                <  5:191657/122‑1 (MQ=255)                                                                                                                              gc‑gcCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAg                                                >  6:191657/1‑122 (MQ=255)                                                                                                                              gc‑gcCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGc                      <  1:336110/148‑1 (MQ=255)                                                                                                                                 gacTTGATGGTGGGCGCCTTGCTGTGGGAGCGGCCTTTTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCTCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAg                   <  6:50047/147‑1 (MQ=255)                                                                                                                                         ggTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGgcgc           >  6:137126/1‑149 (MQ=255)                                                                                                                                             ggCGCCGTCCTGTAGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTc       >  3:303562/1‑149 (MQ=255)                                                                                                                                              gcgcCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTcc      <  7:155215/149‑1 (MQ=255)                                                                                                                                               cgcCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCt     >  3:49709/1‑149 (MQ=255)                                                                                                                                                gcCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAGGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCtt    >  1:1805/1‑149 (MQ=255)                                                                                                                                                 ccGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTtc   <  2:110762/149‑1 (MQ=255)                                                                                                                                                  cGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTtct  <  1:22172/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                       CGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGT‑‑‑ACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCT  >  NC_002947/1114775‑1115067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.