| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5914157 = | 44 (0.790) | 6 (0.140) | 6/220 | 5.7 | 16.4% | intergenic (+49/+104) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase |
| ? | NC_002947 | 5914253 = | 26 (0.590) | intergenic (+145/+8) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCAGCACG > NC_002947/5914107‑5914396 | aaaCGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACCCCCGCTGCCGGAGGGTAATT‑‑TCGAAGGCTGAAGCCTGGG‑AGTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGggcgggc > 1:32509/1‑147 (MQ=39)aaaCAAAAACGCCGCCCTTGAGGGGCGGCGTTTTCGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACCCCCGCACCCCCAGGGGAATT‑‑TAGAAGGCTGAAGCCTGTG‑AATTA‑ACAGTGGGAGCGGGCCTGCCCGCGAAGAGGGCGGcc > 2:120840/1‑149 (MQ=25) cTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCt > 3:99886/1‑148 (MQ=255) tttttttgTGACGGGTGCCGCCCTC‑TCGCGGGCAACGCCGGGCCCCGCTGTTTATTT‑‑TCTACGGCTGACCCTTGTT‑ACTAC‑GGTGGGGTCGGGGGGGGGCCGGCTAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCg < 2:32509/148‑1 (MQ=255) tCGCCCTTTTGGGGGGA‑AGGCCGGCTCCCGAAGGTTATTT‑‑TCGATGGTTTAAGCGTGTT‑ATTTA‑CTTGTGGTAGGGGGGGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTg < 4:99886/148‑1 (MQ=255) tCGCCCTCTTCGCGGGC‑ACGCCCGCTGCCGCAGGGTAATTCCCCTTCGGCTGAAGCGTGTG‑ACTTA‑CCTGTGGGAGCGGGGGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGtt < 1:124193/149‑1 (MQ=255) ttCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCg > 4:219016/1‑147 (MQ=255) ttCGCGGGC‑ACGCCCGCACCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTG‑ACTTA‑ACTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCg > 4:353440/1‑147 (MQ=255) tCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCt > 5:157715/1‑131 (MQ=255) cgcgGGC‑ACGCCCGCGCCCGCTGGGTAATT‑‑TCTACGGGTGAAGCCTGTG‑ACTAA‑CGTGTGGGAGGGGGGGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAg < 5:113311/148‑1 (MQ=255) cgcgGGC‑ACGCCCGCGCCCCCAGGTTATTT‑‑TCCACGGCTTATGCCTTTG‑ACTTA‑CCTGGGGGTGGGGGCGTGCCCGCTAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGaa < 1:120840/147‑1 (MQ=255) gC‑ACGCCCGCTCCCACA‑GGTAA‑G‑‑TCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTTCAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCcgcg > 4:129448/1‑149 (MQ=14) gCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTgcgc > 7:263788/1‑120 (MQ=255) gCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGt < 7:63005/124‑1 (MQ=255) gCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTg < 3:146304/118‑1 (MQ=255) gCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTg > 4:146304/1‑118 (MQ=255) cGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAACGAAGCCCGCGCCGCCGGCAGCCg > 5:267283/1‑149 (MQ=255) ggTAATT‑‑TCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAg < 1:145557/112‑1 (MQ=255) ggTAATT‑‑TCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAg > 2:145557/1‑112 (MQ=255) tGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAg > 6:288052/1‑97 (MQ=255) tGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCa > 2:333982/1‑148 (MQ=255) tGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTGCTCGAAAATCTTCGAATTGCGCTGGTAg < 5:288052/97‑1 (MQ=255) aGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGaa < 6:119238/106‑1 (MQ=255) aGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGaa > 5:119238/1‑106 (MQ=255) tgtg‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCcgcg > 7:37737/1‑149 (MQ=255) tgtg‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCcgcg > 7:43804/1‑149 (MQ=255) ccTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGaa > 7:61142/1‑93 (MQ=255) tcttcgCGGGCACGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGAGCaa > 7:64586/6‑129 (MQ=255) gAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACcagtgc < 1:149555/149‑1 (MQ=255) cGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACcagtgcgcagtgc < 1:58895/149‑1 (MQ=255) tGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCagtgcgcagtgcgc < 3:219016/149‑1 (MQ=255) ccGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACcagtgcg < 5:309296/138‑1 (MQ=255) ccGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACcagtgcg > 6:309296/1‑138 (MQ=255) gAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTa < 1:287481/63‑1 (MQ=255) gAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTa > 2:287481/1‑63 (MQ=255) gagGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAACGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCAGCa < 6:267283/149‑1 (MQ=255) agGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCAGCAc > 6:217312/1‑149 (MQ=255) gggCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCAGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCGCGCGGAACCAGTGCGCAGTGCGCGGAGACAGCAc > 2:286823/1‑148 (MQ=255) ggcggcCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTc > 4:79749/1‑142 (MQ=255) ggcggcCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTc < 3:79749/142‑1 (MQ=255) ggcggcCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCa < 2:371627/143‑1 (MQ=255) ggcggcCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCa > 1:371627/1‑143 (MQ=255) ggcggcCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGGCAGCACg > 6:200174/1‑148 (MQ=255) | AAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGC‑ACGCCCGCTCCCGCAGGGTAATT‑‑TCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCAGCACG > NC_002947/5914107‑5914396 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |