| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1843381 | 17 (0.240) | 34 (0.500) | 32/270 | 1.9 | 67.1% | coding (1413/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | 1843390 = | 17 (0.250) | coding (1404/2754 nt) | gacS | sensor protein GacS | |||||
TTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGGAACAGTGTGCGCACATCCTGAGGTGACAGGCCGATGCCGGTGTCCTGCACGCTGATGCGCAACTGCGCGCAGTCTTCGTGCTCGTCTTCCAGCATGGCGCGCACG > NC_002947/1843237‑1843525 | ttCGGCATCGTGATGATGCTTCGGCAGGTTGAGGCTGAGCCTGAACTGCGAACCTTCGCCCGGTGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGCCCGGCGGCACC‑GGTCTggg < 4:255158/149‑2 (MQ=255) ggCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGTACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgag > 4:265325‑M1/1‑142 (MQ=255) cATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagtt < 2:18849‑M1/149‑10 (MQ=255) aTCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCACCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCTGGCGGGCCa < 5:399763/149‑1 (MQ=255) tCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtc < 1:326411‑M1/147‑13 (MQ=255) tCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtc > 2:326411‑M1/1‑135 (MQ=255) tGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGTTGCCGCC‑GGGCTGGCGGGCCAGTGAGtt < 7:26366/149‑1 (MQ=255) aGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctgg < 3:265325‑M1/149‑20 (MQ=255) aGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctg < 6:32685‑M1/148‑19 (MQ=255) gCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagtt > 6:52518‑M1/1‑129 (MQ=255) gCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagtt < 5:52518‑M1/138‑10 (MQ=255) gCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGcc < 3:67742/148‑1 (MQ=255) ccAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcg > 3:404987‑M1/1‑106 (MQ=255) ccAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGGaa > 4:290141/1‑147 (MQ=255) aGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcac < 4:355766‑M1/149‑46 (MQ=255) cGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctga < 7:347814‑M1/149‑53 (MQ=255) cccGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGTTGCCGCC‑GGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGGAACAGTGTGCGCACATCCTGAgg > 8:185852/1‑149 (MQ=255) gggTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctga < 7:93009‑M1/135‑53 (MQ=255) gggTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctga > 8:93009‑M1/1‑83 (MQ=255) ggTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCCGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCTGGCGGGCCAGTGAGTAGTCAGCCTGGCTGAAGGCCAGGAACAGTGTGCGCACATCCTGAGGTGa > 7:7927/1‑147 (MQ=255) tCGACACCGATCTCCCCCCCCATCTGATCGATCAGGCGCTTCGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcactgagttgtcagcctggatgaacgcctggaacagtgtgcgcacatccagacctcacaggccgatgccgctgt > 4:43563‑M1/1‑75 (MQ=255) acacCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGTTGCCGCC‑GGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGGAACAGTGTGCGCACATc > 4:351246/1‑128 (MQ=255) acacCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGTTGCCGCC‑GGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGGAACAGTGTGCGCACATc < 3:351246/128‑1 (MQ=255) gccgccCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGTTGCCGCC‑GGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGGAACAGTGTGCGCACATCCTGAGGTGACAGGCCGATGCCGgtgt < 5:27497/143‑1 (MQ=255) ccATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgcaa > 4:194477‑M1/1‑56 (MQ=255) ttCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGTTGCCGCC‑GGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGGAACAGTGTGCGCACATCCTGAGGTGACAGGCCGATGCCGGTGTCCTGCACGCTGATg < 2:32953/145‑1 (MQ=255) cGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGTTGCCGCC‑GGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGGAACAGTGTGCGCACATCCTGAGGTGACAGGCCGATGCCGGTGTCCTGCACGCTGATGCGCaa < 7:185852/148‑1 (MQ=255) gATCAGGCGCTTGGAAATCACCAGCCCCAGACCGTTGCCGCC‑GGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGGAACAGTGTGCGCACATCCTGAGGTGACAGGCCGATGCCGGTGTCCTGCACGCTGATGCGCAACt > 7:361534/1‑149 (MQ=255) gATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctcgctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgcaactgcgcgcag > 2:37527‑M1/1‑46 (MQ=255) aTCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgag < 6:255679‑M1/98‑54 (MQ=255) aTCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgag > 5:255679‑M1/1‑45 (MQ=255) tCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcccacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgcaactgcgcgcagtc > 1:341165‑M1/1‑44 (MQ=255) gcTTGGAAATCACCTGCCCCAGACGGGTGCCGCC‑GGGCcagtgagttgtcaggcttgctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcgtgcacgctgatgcgcaactgcgcgcagtcttcgtg < 3:43563‑M1/149‑112 (MQ=255) aaaTCACCAGCCCCAGACCGGTGCCGCCGGGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgcaactgcgcgcagtcttcgtgctcgt > 1:251074‑M1/1‑33 (MQ=255) aTCACCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgcaactgcgcgcagtcttcgtgctcgtctt > 8:175938‑M1/1‑30 (MQ=255) aCCAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgcaactgcgcgcagtcttcgtgctcgtcttc > 2:287527‑M1/1‑27 (MQ=255) ccAGCCCCAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgcaactgcgcgcagtcttcgtgctcgtcttccag > 4:401813‑M1/1‑26 (MQ=255) ccccAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgctcatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgcaactgcgcgcagtcttcgtgctcgtcttccagcatg > 1:339482‑M1/1‑22 (MQ=255) ccccAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgaggtaacaggccgatgccggtgtcctgcacgctgatgcgcaactgcgcgcagtcttcgtgctcgtcttccagcatg < 4:404987‑M1/149‑128 (MQ=255) cccAGACCGTTGCCGCC‑GGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGGAACAGTGTGCGCACATCCTGAGGTGACAGGCCGATGCCGGTGTCCTGCACGCTGATGCGCAACTGCGCGCAGTCTTCGTGCTCGTCTTc > 7:330395/1‑149 (MQ=255) cAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgc < 7:278255‑M1/110‑92 (MQ=255) cAGACCGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgc > 8:278255‑M1/1‑19 (MQ=255) cGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgcaactgcgcgcagtcttcgtgctc > 4:223722‑M1/1‑14 (MQ=255) cGGTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgcaactgcgcgcagtcttcgtgctc < 3:223722‑M1/128‑115 (MQ=255) gTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgcaactgcgcgcagtcttcgtgctcgtcttccagcttggcgcgcacga < 2:341165‑M1/149‑138 (MQ=255) gTGCCGCC‑GGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgcaactgcgcgcagtcttcgtgctcgtcttccagcatggcgcgcacga > 1:240370‑M1/1‑12 (MQ=255) ccgcc‑gGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGGAACAGTGTGCGCACATCCTGAGGTGACAGGCCGATGCCGGTGTCCTGCACGCTGATGCGCAACTGCGCGCAGTCTTCGTGCTCGTCTTCCAGCATGgcgcg < 8:361534/149‑1 (MQ=255) gcc‑gGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgcaa > 6:381042‑M1/1‑7 (MQ=255) gcc‑gGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgcaa < 5:381042‑M1/100‑94 (MQ=255) gcc‑gGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGGGACAGTGTgcg < 7:335102/57‑1 (MQ=255) gcc‑gGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGGGACAGTGTgcg > 8:335102/1‑57 (MQ=255) c‑gGGCcagtgagttgtcagcctggctgaaggcctggaacagtgtgcgcacatcctgaggtgacaggccgatgccggtgtcctgcacgctgatgcgcaactgcgcgcagtcttcgtgctcttcttccagcatggcgcgcacgacgatggt < 8:7927‑M1/149‑145 (MQ=255) | TTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCC‑GGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGGAACAGTGTGCGCACATCCTGAGGTGACAGGCCGATGCCGGTGTCCTGCACGCTGATGCGCAACTGCGCGCAGTCTTCGTGCTCGTCTTCCAGCATGGCGCGCACG > NC_002947/1843237‑1843525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |