New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 77240	89 (1.370)	5 (0.080)	5/256	NT	5.4%	coding (304/1311 nt)	rsmB	ribosomal RNA small subunit methyltransferase B
	?	NC_002947	= 77271	88 (1.390)					coding (273/1311 nt)	rsmB	ribosomal RNA small subunit methyltransferase B

GCTTTCAGCGCCTTCTGCAGCCAGCGCGGGTGCGCGGTACGCACCACCGGGTCGCGCTCCATGCCGGCGAGCAGCTCCTCGCCTTCGCGCTGGGCACGGCGCAGCACGGCATTGAGCAGGCCCTTGGCCCACGGCTTCTTCAGTTTGTCG‑‑‑‑‑GC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/77089‑77240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cg‑‑‑‑‑gcCCATGCCGCCATCGGCGAGACCGTGGGCTGTGCCGACAAACTGAAGAAGCCGTGGGCCAAGGGCCTGCTCAATGCCGTGCTGCGCCGTGCCCAGCGCGAAGGCGAGGAGCTGCTCGCCGGCATGGAGCGCGACCCGGTGGTGCG  <  NC_002947/77271‑77128                                                                                                                                                                                                                                                                                                               GCTTTCAGCGCCTTCTGCAGCCAGCGCGGGTGCGCGGTACGCACCACCGGGTCGCGCTCCATGCCGGCGAGCAGCTCCTCGCCTTCGCGCTGGGTACGGCGCAGCACGGCATTGAGCAGGCCCTTGGCCCACGGCTTCTTCAGTTTGTC                                                                                                                                                          <  5:112213/149‑1  CTTTCAGCGCCTTCTGCAGCCAGCGCGGGTGCGCGGTACGCACCACCGGGTCGCGCTCCATGCCGGCGAGCAGCTCCTCGCCTTCGCGCTGGGCACGGCGCAGCACGGCATTGAGCAGGCCCTTGGCCCACGGCTTCTTCAGTTTGTCG                                                                                                                                                         <  6:308341/149‑1                        GCGCGGGTGCGCGGTACGCACCACCGGGTCGCGCTCCATGCCGGCGAGCAGCTCCTCGCCTTCGCGCTGGGCACGGCGCAGCACGGCATTGAGCAGGCCCTTGGCCCACGGCTTCTTCAGTTTGTCG‑‑‑‑‑GCCCATGCCGCCATCGGCGAGA                                                                                                                              >  1:170749/1‑149                                         GCACCACCGGGTCGCGCTCCATGCCGGCGAGCAGCTCCTCGCCTTCGCGCTGGGCACGGCGCAGCACGGCATTGAGCAGGCCCTTGGCCCACGGCTTCTTCAGTTTGTCGGCACAGCCCATGCCGCCATCGGCGAGACCGTGGGCTGTG                                                                                                                  <  6:221686/149‑1                                             CACCGGGTCGCGCTCCATGCCGGCGAGCAGCTCCTCGCCTTCGCGCTGGGCACGGCGCAGCACGGCATTGAGCAGGCCCTTGGCCCACGGCTTCTTCAGTTTGTCG‑‑‑‑‑GCCCATGCCGCCATCGGCGAGACCGTGGGCTGTGCCGACAAA                                                                                                          <  5:410437/148‑1                                             CACCGGGTCGCGCTCCATGCCGGCGAGCAGCTCCTCGCCTTCGCGCTGGGCACGGCGCAGCACGGCATTGAGCAGGCCCTTGGCCCACGGCTTCTTCAGTTTGTCG‑‑‑‑‑GCCCATGCCGCCATCGGCGAGACCGTGGGCTGTGCCGACAAA                                                                                                          >  6:410437/1‑148                                                 GGGTCGCGCTCCATGCCGGCGAGCAGCTCCTCGCCTTCGCGCTGGGCACGGCGCAGCACGGCATTGAGCAGGCCCTTGGCCCACGGCTTCTTCAGTTTGTCG‑‑‑‑‑GCCCATGCCGCCATCGGCGAGACCGTGGGCTGTGCCGACAAACTGAA                                                                                                     <  2:170749/149‑1                                                                                                                                                     CG‑‑‑‑‑GCCCATGCCGCCATCGGCGAGACCGTGGGCTGTGCCGACAAACTGAAGAAGCCGTGGGCCAAGGGCCTGCTCAATGCCGTGCTGCGCCGTGCCCAGCGCGAAGGCGAGGAGCTGCTCGCCGGCATGGAGCGCGACCCGGTGGTGCG  <  1:201377/148‑1                                                                                                                                                     CG‑‑‑‑‑GCCCATGCCGCCATCGGCGAGACCGTGGGCTGTGCCGACAAACTGAAGAAGCCGTGGGCCAAGGGCCTGCTCAATGCCGTGCTGCGCCGTGCCCAGCGCGAAGGCGAGGAGCTGCTCGCCGGCATGGAGCGCGACCCGGTGGTGCG  >  5:255611/1‑148                                                                                                                                                                                                                                                                                                               GCTTTCAGCGCCTTCTGCAGCCAGCGCGGGTGCGCGGTACGCACCACCGGGTCGCGCTCCATGCCGGCGAGCAGCTCCTCGCCTTCGCGCTGGGCACGGCGCAGCACGGCATTGAGCAGGCCCTTGGCCCACGGCTTCTTCAGTTTGTCG‑‑‑‑‑GC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/77089‑77240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cg‑‑‑‑‑gcCCATGCCGCCATCGGCGAGACCGTGGGCTGTGCCGACAAACTGAAGAAGCCGTGGGCCAAGGGCCTGCTCAATGCCGTGCTGCGCCGTGCCCAGCGCGAAGGCGAGGAGCTGCTCGCCGGCATGGAGCGCGACCCGGTGGTGCG  <  NC_002947/77271‑77128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.