New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	437647 =	57 (0.880)	3 (0.050)	3/248	NT	6.3%	coding (713/1008 nt)	rdoA	serine/threonine protein kinase
	?	NC_002947	437711 =	36 (0.590)					coding (649/1008 nt)	rdoA	serine/threonine protein kinase

CCGCGATCTGCTCAAGCGGGTGGAGGACATCTACGCTCGCACACCACACCAGCTCATCCGCCTGCACGGCGACCTGCACCCCGGCAACCTGATGCACCGCGATGAGGTGTACCACGTGGTCGACCTCGACGATTGCCGCATGGGCCCAGCGGTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/437802‑437647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtgcaTCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAGCAGATCGCGGGCCACGGACTCGAACGCCGGCAGCAGTTCATGTGGGACAAAATTACCCTCC  >  NC_002947/437711‑437853                                                                                                                                                                                                                                                                                                             CCGCGATCTGCTCAAGCGGGTGGAGGGCATCTACGCTCGCACACCACACCAGCTCATCCGCCTGCACGGCGACCTGCACCCCGGCAACCTGATGCACCGCGATGAGGTGTACCACGTGGTCGACCTCGACGATTGCCGCATGGGCCCAG                                                                                                                                                        >  4:354721/1‑149           CTCAAGCGGGTGGAGGACATCTACGCTCGCACACCACACCAGCTCATCCGCCTGCACGGCGACCTGCACCCCGGCAACCTGATGCACCGCGATGAGGTGTACCACGTGGTCGACCTCGACGATTGCCGCATGGGCCCAGCGGTGC                                                                                                                                                  <  1:227370/145‑1           CTCAAGCGGGTGGAGGACATCTACGCTCGCACACCACACCAGCTCATCCGCCTGCACGGCGACCTGCACCCCGGCAACCTGATGCACCGCGATGAGGTGTACCACGTGGTCGACCTCGACGATTGCCGCATGGGCCCAGCGGTGC                                                                                                                                                  <  3:131704/145‑1           CTCAAGCGGGTGGAGGACATCTACGCTCGCACACCACACCAGCTCATCCGCCTGCACGGCGACCTGCACCCCGGCAACCTGATGCACCGCGATGAGGTGTACCACGTGGTCGACCTCGACGATTGCCGCATGGGCCCAGCGGTG                                                                                                                                                   <  7:232529/144‑1                                             CACACCAGCTCATCCGCCTGCACGGCGACCTGCACCCCGGCAACCTGATGCACCGCGATGAGGTGTACCACGTGGTCGACCTCGACGATTGCCGCATGGGCCCAGCGGT                                                                                                                                                    >  7:319139/1‑109                                             CACACCAGCTCATCCGCCTGCACGGCGACCTGCACCCCGGCAACCTGATGCACCGCGATGAGGTGTACCACGTGGTCGACCTCGACGATTGCCGCATGGGCCCAGCGGT                                                                                                                                                    <  8:319139/109‑1                                                                                         CTGATGCACCGCGATGAGGTGTACCACGTGGTCGACCTCGACGATTGCCGCATGGGCCCAGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTT                                                                  >  7:328088/1‑147                                                                                            ATGCACCGCGATGAGGTGTACCACGTGGTCGACCTCGACGATTGCCGTATGGGCCCAGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAG                                                               >  7:134514/1‑147                                                                                                                 CACGTGGTCGACCTCGACGATTGCCGTATGGGCCCAGCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAGCAGATCGCGGGCCACGGACTCGA                                        <  8:134514/149‑1                                                                                                                                                     GCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAGCAGATCGCGGGCCACGGACTCGAACGCCGGCAGCAGTTCATGTGGGACAAAATT         <  3:102554/144‑1                                                                                                                                                     GCGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAGCAGATCGCGGGCCACGGACTCGAACGCCGGCAGCAGTTCATGTGGGACAAAATT         >  4:102554/1‑144                                                                                                                                                      CGGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAGCAGATCGCGGGCCACGGACTCGAACGCCGGCAGCAGTTCATGTGGGACAAAATTACCCTC   <  3:108282/149‑1                                                                                                                                                       GGTGCATCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAGCAGATCGCGGGCCACGGACTCGAACGCCGGCAGCAGTTCATGTGGGACAAAATTACCCTCC  <  2:227370/149‑1                                                                                                                                                                                                                                                                                                             CCGCGATCTGCTCAAGCGGGTGGAGGACATCTACGCTCGCACACCACACCAGCTCATCCGCCTGCACGGCGACCTGCACCCCGGCAACCTGATGCACCGCGATGAGGTGTACCACGTGGTCGACCTCGACGATTGCCGCATGGGCCCAGCGGTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/437802‑437647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggtgcaTCAGGTTGCCGGGGTGCAGGTCGCCGTGCAGGCGGATGAGCTGGTGTGGTGTGCGAGCGTAGATGTCCTCCACCCGCTTGAGCAGATCGCGGGCCACGGACTCGAACGCCGGCAGCAGTTCATGTGGGACAAAATTACCCTCC  >  NC_002947/437711‑437853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.