New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1331705	NA (NA)	3 (0.050)	3/254	NT	NA	coding (930/1644 nt)	PP_1157	acetolactate synthase
	?	NC_002947	= 1331731	NA (NA)					coding (956/1644 nt)	PP_1157	acetolactate synthase

TCGAAGCCGCCGACCTGATCATCAACATCGGCCACGATGTGATCGAGAAGCCGCCGTTCTTCATGGTCCGTGGCGGCACCGAAGTCATCCACATCAACTTCCGCTCTGCCGAAGTCGATGCCGTGTACTTCCCGCAAGTAGAAGTGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1331557‑1331705 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatcTGCCACACGGCGTTGGCGATGTCGCCGATCACTTCTACTTGCGGGAAGTACACGGCATCGACTTCGGCAGAGCGGAAGTTGATGTGGATGACTTCGGTGCCGCCACGGACCATGAAGAACGGCGGCTTCTCGAT  <  NC_002947/1331731‑1331598                                                                                                                                                                                                                                                                                             TCGAAGCCGCCGACCTGATCATCAACATCGGCCACGATGTGATCGAGAAGCCGCCGTTCTTCATGGTCCGTGGCGGCACCGAAGTCATCCACATCAACTTCCGCTCTGCCGAAGTCGATGCCGTGTACTTCCCGCAAGTAGAAGTGATC                                                                                                                                        <  4:317454/149‑1                                      TGTGATCGAGAAGCCGCCGTTCTTCATGGTCCGTGGCGGCACCGAAGTCATCCACATCAACTTCCGCTCTGCCGAAGTCGATGCCGTGTACTTCCCGCAAGTAGAAGTGATCTGCCACACGGCGTTGGCGATGTCGCCGATCACTTCTA                                                                                                   <  2:393205/149‑1                                                     GCCGTTCTTCATGGTCCGTGGCGGCACCGAAGTCATCCACATCAACTTCCGCTCTGCCGAAGTCGATGCCGTGTACTTCCCGCAAGTAGAAGTGATCTGCCACACGGCGTTGGCGATGTCGCCGATCACTTCT                                                                                                    >  3:49417/1‑133                                                     GCCGTTCTTCATGGTCCGTGGCGGCACCGAAGTCATCCACATCAACTTCCGCTCTGCCGAAGTCGATGCCGTGTACTTCCCGCAAGTAGAAGTGATCTGCCACACGGCGTTGGCGATGTCGCCGATCACTTCT                                                                                                    <  4:49417/133‑1                                                            TTCATGGTCCGTGGCGGCACCGAAGTCATCCACATCAACTTCCGCTCTGCCGAAGTCGATGCCGTGTACTTCCCGCAAGTAGAAGTGA                                                                                                                                          <  1:393593/88‑1                                                            TTCATGGTCCGTGGCGGCACCGAAGTCATCCACATCAACTTCCGCTCTGCCGAAGTCGATGCCGTGTACTTCCCGCAAGTAGAAGTGA                                                                                                                                          >  2:393593/1‑88                                                                                                                                                 TGATCTGCCACACGGCGTTGGCGATGTCGCCGATCACTTCTACTTGCGGGAAGTACACGGCATCGACTTCGGCAGAGCGGAAGTTGATGTGGATGACTTCGGTGCCGCCATGGACCATGAAGAACGGCGGCTTCTCGAT  >  3:289782/1‑139                                                                                                                                                 TGATCTGCCACACGGCGTTGGCGATGTCGCCGATCACTTCTACTTGCGGGAAGTACACGGCATCGACTTCGGCAGAGCGGAAGTTGATGTGGATGACTTCGGTGCCGCCATGGACCATGAAGAACGGCGGCTTCTCGAT  <  4:289782/139‑1                                                                                                                                                   ATCTGCCACACGGCGTTGGCGATGTCGCCGATCACTTCTACTTGCGGGAAGTACACGGCATCGACTTCGGCAGAGCGGAAGTTGATGTGGATGACTTCGG                                       >  1:362989/1‑100                                                                                                                                                   ATCTGCCACACGGCGTTGGCGATGTCGCCGATCACTTCTACTTGCGGGAAGTACACGGCATCGACTTCGGCAGAGCGGAAGTTGATGTGGATGACTTCGG                                       <  2:362989/100‑1                                                                                                                                                                                                                                                                                             TCGAAGCCGCCGACCTGATCATCAACATCGGCCACGATGTGATCGAGAAGCCGCCGTTCTTCATGGTCCGTGGCGGCACCGAAGTCATCCACATCAACTTCCGCTCTGCCGAAGTCGATGCCGTGTACTTCCCGCAAGTAGAAGTGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1331557‑1331705 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatcTGCCACACGGCGTTGGCGATGTCGCCGATCACTTCTACTTGCGGGAAGTACACGGCATCGACTTCGGCAGAGCGGAAGTTGATGTGGATGACTTCGGTGCCGCCACGGACCATGAAGAACGGCGGCTTCTCGAT  <  NC_002947/1331731‑1331598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.