New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1408145	43 (0.660)	4 (0.060)	4/254	NT	7.4%	coding (598/1509 nt)	PP_1230	hypothetical protein
	?	NC_002947	= 1408184	59 (0.940)					coding (637/1509 nt)	PP_1230	hypothetical protein

CCTGGGTTACGGCGGCAATGTGGTCAGCCAGGTTCAGCTGGCGCCGCTCAAGTTTGACGAAGCGGATGGCAACAGCCTTGACTTCTCGGGCATGCAGTTCGAAGTCAGTGGGGACAAGGAGGGCAAGGCCTCGAAGTTCCACGGCCAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1407994‑1408145 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgGCGGCTGGTCGTCATGCACCCATTTCATCACCAGCCTGTCGGCCTGGCCGTGGAACTTCGAGGCCTTGCCCTCCTTGTCCCCACTGACTTCGAACTGCATGCCCGAGAAGTCAAGGCTGTTGCCATCCGCTTCGTCAAACTTGAGCGG  <  NC_002947/1408184‑1408037                                                                                                                                                                                                                                                                                                              CCTGGGTTACGGCGGCAATGTGGTCAGCCAGGTTCAGCTGGCGCCGCTCAAGTTTGACGAAGCGGATGGCAACAGCCTTGACTTCTCGGGCATGCAGTTCGAAGTCAGTGGGGACAAGGAGGGCAAGGCCTCGAAGTTCCACGGCCAGG                                                                                                                                                         >  8:344843/1‑149  CTGGGTTACGGCGGCAATGTGGTCAGCCAGGTTCAGCTGGCGCCGCTCAAGTTTGACGAAGCGGATGGCAACAGCCTTGACTTCTCGGGCATGCAGTTCGAAGTCAGTGGGGACAAGGAGGGCAAGGCCTCGAAGTTCCACGGCCAGGC                                                                                                                                                        <  1:74179/149‑1           GGCGGCAATGTGGTCAGCCAGGTTCAGCTGGCGCCGCTCAAGTTTGACGAAGCGGATGGCAACAGCCTTGACTTCTCGGGCATGCAGTTCGAAGTCAGTGGGGACAAGGAGGGCAAGGCCTCGAAGTTCCACGGCCAGGCCGGCGGCTG                                                                                                                                               >  4:33897/1‑149                                                      TTGACGAAGCGGATGGCAACAGCCTTGACTTCTCGGGCATGCAGTTCGAAGTCAGTGGGGACAAGGAGGGCAAGGCCTCGAAGTTCCACGGCCAGGCCGGCGGCTGGTCGTCATGCACCCATTTCATCACCAGCCTGTCGGCCTGG                                                                                                       >  1:216837/1‑146                                                      TTGACGAAGCGGATGGCAACAGCCTTGACTTCTCGGGCATGCAGTTCGAAGTCAGTGGGGACAAGGAGGGCAAGGCCTCGAAGTTCCACGGCCAGGCCGGCGGCTGGTCGTCATGCACCCATTTCATCACCAGCCTGTCGGCCTGG                                                                                                       <  2:216837/146‑1                                                        GACGAAGCGGATGGCAACAGCCTTGACTTCTCGGGCATGCAGTTCGAAGTCAGTGGGGACAAGGAGGGCAAGGCCTCGAAGTTCCACGGCCAGGCCGGCGGCTGGTCGTCATGCACCCATTTCATCACCAGCCTGTCGGCCTGGCCGT                                                                                                   <  3:33897/148‑1                                                                                                                                                      CCGGCGGCTGGTCGTCATGCACCCATTTCATCACCAGCCTGTCGGCCTGGCCGTGGAACTTCGAGGCCTTGCCCTCCTTGTCCCCACTGACTTCGAACTGCATGCCCGAGAAGTCAAGGCTGTTGCCATCCGCTTCGTCAAACTTGAGC    >  2:295340/1‑149                                                                                                                                                      CCGGCGGCTGGTCGTCATGCACCCATTTCATCACCAGCCTGTCGGCCTGGCCGTGGAACTTCGAGGCCTTGCCCTCCTTGTCCCCACTGACTTCGAACTGCATGCCCGAGAAGTCAAGGCTGTTGCCATCCGCTTCGTCAAAC          >  1:375942/1‑143                                                                                                                                                      CCGGCGGCTGGTCGTCATGCACCCATTTCATCACCAGCCTGTCGGCCTGGCCGTGGAACTTCGAGGCCTTGCCCTCCTTGTCCCCACTGACTTCGAACTGCATGCCCGAGAAGTCAAGGCTGTTGCCATCCGCTTCGTCAAAC          <  2:375942/143‑1                                                                                                                                                        GGCGGCTGGACGTCATGCACCCATTTCATCAACAGCCTGTCGGCCTGGCCGTGGAACTTCGAGCCCTTGCCCTCCTTGTCCACACTGACTTCCAACTGCATGCACGAGAAGTCAAGGCTGTTGCCATCCGCATCGTCAAACTTGcgagg  >  4:370235/1‑144                                                                                                                                                                                                                                                                                                              CCTGGGTTACGGCGGCAATGTGGTCAGCCAGGTTCAGCTGGCGCCGCTCAAGTTTGACGAAGCGGATGGCAACAGCCTTGACTTCTCGGGCATGCAGTTCGAAGTCAGTGGGGACAAGGAGGGCAAGGCCTCGAAGTTCCACGGCCAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1407994‑1408145 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgGCGGCTGGTCGTCATGCACCCATTTCATCACCAGCCTGTCGGCCTGGCCGTGGAACTTCGAGGCCTTGCCCTCCTTGTCCCCACTGACTTCGAACTGCATGCCCGAGAAGTCAAGGCTGTTGCCATCCGCTTCGTCAAACTTGAGCGG  <  NC_002947/1408184‑1408037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.