| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1453168 | 72 (1.110) | 4 (0.070) | 3/248 | NT | 6.2% | coding (1330/1542 nt) | PP_1271 | putative Multidrug efflux MFS transporter |
| ? | NC_002947 | = 1453262 | 53 (0.870) | coding (1424/1542 nt) | PP_1271 | putative Multidrug efflux MFS transporter | |||||
GCCAGCCGATGGCAGTGCTGCCGTTGCTGATGCTGTCCACCAATGGCATGACCCCGCAGGAGGGCCCGTTCGCCTCCAGCTGGTTCAACACCGTCAAGGGCCTGGCCGCCGTCATCGCCGGCGGCCTGCTGGATGTTCTTGGCACCCTGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1453016‑1453168‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcgccTGGTCGTGAATGCGCTTGGCCAGGCCAGCGGCGTTGCCGTCGACCAGCGGGGCGTTGCCCAGGCTGTCCACCAGGTGATTGGAATGGAAATGCCGGCGCAGGGTGCCAAGAACATCCAGCAGGCCGCCGGCGATGACGGCGGCCA < NC_002947/1453262‑1453118 GCCAGCCGATGGCAGTGCTGCCGTTGCTGATGCTGTCCACCAATGGCATGACCCCGCAGGAGGGCCCGTTCGCCTCCAGCTGGTTCAACACCGTCAAGGGCCTGGCCGCCGTCATCGCCGGCGGCCTGCTGGATGTTCTTGGCACCCTG > 1:189893/1‑149GCCAGCCGATGGCAGTGCTGCCGTTGCTGATGCTGTCCACCAATGGCATGACCCCGCAGGAGGGCCCGTTCGCCTCCAGCTGGTTCAACACCGTCAAGGGCCTGGCCGCCGTCATCGCCGGCGGCCTGCTGGATGTTCTTGGCACCCTG > 5:119224/1‑149 CCAGCCGATGGCAGTGCTGCCGTTGCTGATGCTGTCCACCAATGGCATGACCCCGCAGGAGGGCCCGTTCGCCTCCAGCTGGTTCAACACCGTCAAGGGCCTGGCCGCCGTCATCGCCGGCGGCCTGCTGGATGTTCTTGGCACCCTGC < 3:318111/149‑1 GATGGCAGTGCTGCCGTTGCTGATGCTGTCCACCAATGGCATGACCCTGCAGGAGGGCCCGTTCGCCTCCAGCTGGTTCAACACCGTCAAGGGCCTGGCCGCCGTCATCGCCGGCGGCCTGCTGGATGTTCTTGGCACCCTGCcaaaag > 1:243798/1‑143 GATGGCAGTGCTGCCGTTGCTGATGCTGTCCACCAATGGCATGACCCCGCAGGAGGGCCCGTTCGCCTCCAGCTGGTTCAACACCGTCAAGGGCCTGGCCGCCGTCATCGCCGGCGGCCTGCTGGATGTTCTTGGCACCCTGCGCCTGG > 2:124218/1‑149 GATGGCAGTGCTGCCGTTGCTGATGCTGTCCACCAATGGCATGACCCCGCAGGAGGGCCCGTTCGCCTCCAGCTGGTTCAACACCGTCAAGGGACTGGCCGCCGTCATCGCCGGCGGCCTGCTGGATGTTCTTGGCACCCTGCGCCTGG > 2:129188/1‑149 ATGGCAGTGGTGCCGTTGCTGATGCTGTCCCCCAATGGCATGACACCGCAGGAGGGCCCGTTCGCCTCCAGCTGGTTCAACACCGTCAAGGGCCTGGCCGCCGTCATCCCCTGCGGCCTGCTGGATGTTCTAGGAACCCTGCGCCTGc > 4:262095/1‑147 TCAACACCGTCAAGGGCCTGGCCGCCGTCATCGCCGGCGGCCTACTGGATGTTCTTGGCACCCTGCGCCTGGTCGTGAATGCGCTTGGCCAGGCCAGCGGCGTTGCCGTCGACCAGCGGGGCGTTGCCCAGGCTGTCCACCAGGTGATT > 5:72359/1‑149 CGCCGTCATCGCCGGCGGCCTTCTGGATGTTCTTGGCACCCTGCGCCTGGTCGTGAATGCGCTTGGCCAGGCCAGCGGCGTTGCCGTCGACCAGCGGGGCGTTGCCCAGGCTGTCCACCAGGTGATTGGAATGGAAATGCCGGCGCAGG < 6:72359/149‑1 GCCGTCATCGCCGGCGGCCTGCTGGATGTTCTTGGCACCCTGCGCCTGGTCGTGAATGCGCTTGGCCAGGCNAGCGGCGTTGCCGTCGACCAGCGGGGCGTTGCCCAGGCTGTCCACCAGGTGATTGGAATGGAAATGCCGGCGCAGGG < 1:129188/149‑1 GCCGTCATCGCCGGCGGCCTGCTGGATGTTCTTGGCACCCTGCGCCTGGTCGTGAATGCGCTTGGCCAGGCCAGCGGCGTTGCCGTCGACCAGCGGGGCGTTGCCCAGGCTGTCCACCAGGTGATTGGAATGGAAATGCCGGCGCAGGG < 1:124218/149‑1 CCTGCGCCTGGTCGTGAATGCGCTTGGCCAGGCCAGCGGCGTTGCCGTCGACCAGCGGGGCGTTGCCCAGGCTGTCCACCAGGTGATTGGAATGGAAATGCCGGCGCAGGGTGCCAAGAACATCCAGCAGGCCGCCGGCGATGACGGC < 4:301202/148‑1 CTGCGCCTGGTCGTGAATGCGCTTGGCCAGGCCAGCGGCGTTGCCGTCGACCAGCGGGGCGTTGCCCAGGCTGTCCACCAGGTGATTGGAATGGAAATGCCGGCGCAGGGTGCCAAGAACATCCAGCAGGCCGCCGGCGATGACGGCGG > 4:60889/1‑149 CTGCGCCTGGTCGTGAATGCGCTTGGCCAGGCCAGCGGCGTTGCCGTCGACCAGCGGGGCGTTGCCCAGGCTGTCCACCAGGTGATTGGAATGGAAATGCCGGCGCAGGGTGCCAAGAACATCCAGCA < 1:371631/128‑1 CTGCGCCTGGTCGTGAATGCGCTTGGCCAGGCCAGCGGCGTTGCCGTCGACCAGCGGGGCGTTGCCCAGGCTGTCCACCAGGTGATTGGAATGGAAATGCCGGCGCAGGGTGCCAAGAACATCCAGCA > 2:371631/1‑128 CGCCTGGTCGTGAATGCGCTTGGCCAGGCCAGCGGCGTTGCCGTCGACCAGCGGGGCGTTGCCCAGGCTGTCCACCAGGTGATTGGACTGGAAATGCCGGCGCAGGGTGCCAAGAACATCCAGCAGGCCGCCGGCGATGACGGCGGCCA < 3:208328/149‑1 GCCAGCCGATGGCAGTGCTGCCGTTGCTGATGCTGTCCACCAATGGCATGACCCCGCAGGAGGGCCCGTTCGCCTCCAGCTGGTTCAACACCGTCAAGGGCCTGGCCGCCGTCATCGCCGGCGGCCTGCTGGATGTTCTTGGCACCCTGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1453016‑1453168‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcgccTGGTCGTGAATGCGCTTGGCCAGGCCAGCGGCGTTGCCGTCGACCAGCGGGGCGTTGCCCAGGCTGTCCACCAGGTGATTGGAATGGAAATGCCGGCGCAGGGTGCCAAGAACATCCAGCAGGCCGCCGGCGATGACGGCGGCCA < NC_002947/1453262‑1453118 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |