New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2090572 =	78 (1.200)	4 (0.060)	4/252	NT	5.7%	intergenic (+249/‑103)	PP_1867/deaD	hypothetical protein/ATP‑dependent DEAD‑box RNA helicase DeaD
	?	NC_002947	2090654 =	59 (0.950)					intergenic (+331/‑21)	PP_1867/deaD	hypothetical protein/ATP‑dependent DEAD‑box RNA helicase DeaD

AATGTTCGGGTTAAGATCGAGAGCGGCGAAGCCGCCGGTTTCCTGGGTCATGGGTCTGCCTCTAGGTGCATCCGCAAAGACCCATGCTCCAAAGCTGCACATGCCTTGAAAGACCGTCAGGTCACCCAGGCAGCTTTGGCG‑GCGGGGATTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2090725‑2090572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgcgGATGCACCTAGAGGCAGACCCATGACCCAGGAAACCGGCGGCTTCGCCGCTCTCGATCTTAACCCGAACATTGTTGCTGCCGTTGTGGCTACCGGCTACGAAGAGCCGTCCGCCATTCAGCAACAATCGATCCCGATCATCCTCGCCG  >  NC_002947/2090654‑2090801                                                                                                                                                                                                                                                                                                                 AATGTTCGGGTTAAGATCGAGAGCGGCGAAGCCGCCGGTTTCCTGGGTCATGGGTCTGCCTCTAGGTGCATCCGCAAAGACCCATGCTCCAAAGCTGCACATGCCTTGAAAGACCGTCAGGTCACCCAGGCAGCTTTGGCG‑GCGGGGAT                                                                                                                                                           >  5:126741/1‑149                                                                       TCCGCAAAGACCCATGCTCCAAAGCTGCACATGCCTTGAAAGACCGTCAGGTCACCCAGGCAGCTTTGGCG‑GCGGGGATTTGCGGATGCACCTAGAGGCAGACCCATGACCCAGGAAACCGGCG                                                                                                              <  7:246303/124‑1                                                                       TCCGCAAAGACCCATGCTCCAAAGCTGCACATGCCTTGAAAGACCGTCAGGTCACCCAGGCAGCTTTGGCG‑GCGGGGATTTGCGGATGCACCTAGAGGCAGACCCATGACCCAGGAAACCGGCG                                                                                                              >  8:246303/1‑124                                                                                    ATGCTCCAAAGCTGCACATGCCTTGAAAGACCGTCAGGTCACCCAGGCAGCTTTGGCG‑GCGGGGATTTGCGGATGCACCTAGAGGCAGACCCATGACCCAGGAAACCGGCGGCTTCGCCGCTCTCGATCTTAACCCGAACATTGTTGCT                                                                        >  3:353224/1‑149                                                                                          CAAAGCTGCACATGCCTTGAAAGACCGTCAGGTCACCCAGGCAGCTTTGGAGCATGGGTCTTTGCGGATGCACCTAGAGGCAGACCCATGACCCAGGAAACCGGCGGCTTCGCCGCTCTCGATCTTAACCCGAACATTGTTGCTGCCGT                                                                   >  5:107707/1‑149                                                                                                                                                      TTTGCGGATGCACCTAGAGGCAGACCCATGACCCAGGAAACCGGCGGCTTCGCCGCTCTCGATCTTAACCCGAACATTGTTGCTGCCGTTGTGGCTACCGGCTACGAAGAGCCGTCCGCCATTCAGCAACAATCGATCCCGATCATCCT       >  4:193535/1‑149                                                                                                                                                      TTTGCGGATGCACCTAGAGGCAGACCCATGACCCAGGAAACCGGCGGCTTCGCCGCTCTCGATCTTAACCCGAACATTGTTGCTGCCGTTGTGGCTACCGGCTACGAAGAGCCGTCCGCCATTCAGCAACAAT                       >  5:294502/1‑133                                                                                                                                                      TTTGCGGATGCACCTAGAGGCAGACCCATGACCCAGGAAACCGGCGGCTTCGCCGCTCTCGATCTTAACCCGAACATTGTTGCTGCCGTTGTGGCTACCGGCTACGAAGAGCCGTCCGCCATTCAGCAACAAT                       <  6:294502/133‑1                                                                                                                                                           GGATGCACCTAGAGGCAGACCCATGACCCAGGAAACCGGCGGCTTCGCCGCTCTCGATCTTAACCCGAACATTGTTGCTGCCGTTGTGGCTACCGGCTACGAAGAGCCGTCCGCCATTCAGCAACAATCGATCCCGATCATCCTCGCCG  <  6:107707/149‑1                                                                                                                                                                                                                                                                                                                 AATGTTCGGGTTAAGATCGAGAGCGGCGAAGCCGCCGGTTTCCTGGGTCATGGGTCTGCCTCTAGGTGCATCCGCAAAGACCCATGCTCCAAAGCTGCACATGCCTTGAAAGACCGTCAGGTCACCCAGGCAGCTTTGGCG‑GCGGGGATTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2090725‑2090572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgcgGATGCACCTAGAGGCAGACCCATGACCCAGGAAACCGGCGGCTTCGCCGCTCTCGATCTTAACCCGAACATTGTTGCTGCCGTTGTGGCTACCGGCTACGAAGAGCCGTCCGCCATTCAGCAACAATCGATCCCGATCATCCTCGCCG  >  NC_002947/2090654‑2090801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.