| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2248955 = | 57 (0.880) | 4 (0.060) | 3/250 | NT | 6.1% | coding (644/3297 nt) | PP_1983 | PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase |
| ? | NC_002947 | 2249028 = | 70 (1.140) | coding (571/3297 nt) | PP_1983 | PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase | |||||
ACCTGAGCCCCAACGCCATTTTGCTGACCCGCCGCCGCGATGGCATGATCTTCGAGGTCAACCAGCACTTCGAAGACATGTTCGGCTGGCCCGGCAGCCAGGTGATCGGCAAGACCAGCCTGGAACTGGGCCTGTGGGTCAACCCCGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2249105‑2248955‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaacaTGTCTTCGAAGTGCTGGTTGACCTCGAAGATCATGCCATCGCGGCGGCGGGTCAGCAAAATGGCGTTGGGGCTCAGGTGAAACAGCGTGGCGAAGCGCTTTTCCGAATTGATCAGCGCCGTTTCCCGTTCGCGCTGGCGGGTGA > NC_002947/2249028‑2249171 ACCTGAGCCCCAACGCCATTTTGCTGACCCGCCGCCGCGATGGCATGATCTTCGAGGTCAACCAGCACTTCGAAGACATGTTCGGCTGGCCCGGCAGCCAGGTGTTCGGCAAGACCAGCCTGGAACTGGGCCTGTGGGTCAACCCCGA < 2:157427/148‑1 CTGAGCCCCAACGCCATTTTGCTGACCCGCCGCCGCGATGGCATGATCTTCGAGGTCAACCAGCACTTCGAAGACATGTTCGGCTGGCCCGGCAGCCAGGTGATCGGCAAGTCCAGCCTGGAACTGGGCCTGTGGGTCAAGCCCGAACA < 8:286457/149‑1 GAAGACATGTTCGGCTGGCCCGGCAGCCAGGTGATCGGCAAGACCAGCCTGGAACTGGGCCTGTGGGTCAACCCCGAACATGTCTTCGAAGTGCTGGTTGACCTCGAAGATCATGCCATCGCGGCGGCGGGTCAGCAAAATGGCGTTGG > 1:224318/1‑149 GAAGACATGTTCGGCTGGCCCGGCAGCCAGGTGATCGGCAAGACCAGCCTGGAACTGGGCCTGTGGGTCAACCCCGAACATCTCTTCGAAGTGCTGGTTGACCTCGAAGATCATGCCATCGCGGCGGCGGGTCAGCAAAATGGCGTTGG > 4:96439/1‑149 ATCGGCAAGACCAGCCTGGAACTGGGCCTGTGGGTCAACCCCGAACATGTCTTCGAAGTGCTGGTTGACCTCGAAGATCATGCCATCGCGGCGGCGGGTCAGCAAAATGGCGTTGGGGCTCAGGTGAAACAGCGTGGCGAAGCGCTTT < 3:96439/148‑1 TCGGCAAGACCAGCCTGGAACTGGGCCTGTGGGTCAACCCCGAACATGTCTTCGAAGTGCTGGTTGACCTCGAAGATCATGCCATCGCGGCGGCGGGTCAGCAAAATGGCGTTGGGGCTCAGGTGAAACAGCGTGGCGAAGCGCTTTTC < 2:224318/149‑1 CGAACATGTCTTCGAAGTGCTGGTTGACCTCGAAGATCATGCCATCGCGGCGGCGGGTCAGCAAAATGGCGTTGGGGCTCAGGTGAAACAGCGTGGCGAAGCGCTTTTCCGAATTGATCAGCGCCGTTTCCCGTTCGCGCTGGCGGGTG < 7:286457/149‑1 GAACATGTCTTCGAAGTGCTGGTTGACCTCGAAGATCATGCCATCGCGGCGGCGGGTCAGCAAAATGGCGTTGGGGCTCAGGTGAAACAGCGTGGCGAAGCGCTTTTCCGAATTGATCAGCGCCGTTTCCCGTTCGCGCTGGCGGGTGA > 4:87060/1‑149 ACCTGAGCCCCAACGCCATTTTGCTGACCCGCCGCCGCGATGGCATGATCTTCGAGGTCAACCAGCACTTCGAAGACATGTTCGGCTGGCCCGGCAGCCAGGTGATCGGCAAGACCAGCCTGGAACTGGGCCTGTGGGTCAACCCCGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2249105‑2248955‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaacaTGTCTTCGAAGTGCTGGTTGACCTCGAAGATCATGCCATCGCGGCGGCGGGTCAGCAAAATGGCGTTGGGGCTCAGGTGAAACAGCGTGGCGAAGCGCTTTTCCGAATTGATCAGCGCCGTTTCCCGTTCGCGCTGGCGGGTGA > NC_002947/2249028‑2249171 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |