New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2665181 =	53 (0.810)	3 (0.050)	3/250	NT	6.2%	coding (1044/2589 nt)	acnA‑II	aconitate hydratase
	?	NC_002947	2665218 =	41 (0.670)					coding (1081/2589 nt)	acnA‑II	aconitate hydratase

TGATCACCGCGCCGTCCGGCATCTGCCCCGGCACCTCTTCCCAGCTGCCGGCGATGCCTTTGGCCGCCAGGTCGCTGGTGGCGACGCGGGCATGCGGGTTGGACGGGCCGGCCATGTTGCGTACCACGCTCGACAGGTCGAAGCTCAGGGTACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2665335‑2665181 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtacgcAACATGGCCGGCCCGTCCAACCCGCATGCCCGCGTCGCCACCAGCGACCTGGCGGCCAAAGGCATCGCCGGCAGCTGGGAAGAGGTGCCGGGGCAGATGCCGGACGGCGCGGTGATCATCGCTGCCATCACCAGTTGC  >  NC_002947/2665218‑2665355                                                                                                                                                                                                                                                                                                       TGATCACCGCGCCGTCCGGCATCTGCCCCGGCACCTCTTCCCAGCTGCCGGCGATGCCTTTGGCCGCCAGGTCGCTGGTGGCGACGCGGGCATGCGGGTTGGACGGGCCGGCCATGTTGCGTACCACGCTCGACAGGTCGAAGCTCAGG                                                                                                                                                  <  3:113910/149‑1                                                          CTTTGGCCGCCAGGTCGCTGGTGGCGACGCGGGCATGCGGGTTGGACGGGCCGGCCATGTTGCGTACCACGCTCGACAGGTCGAAGCTCAGG                                                                                                                                                  >  5:193082/1‑92                                                          CTTTGGCCGCCAGGTCGCTGGTGGCGACGCGGGCATGCGGGTTGGACGGGCCGGCCATGTTGCGTACCACGCTCGACAGGTCGAAGCTCAGG                                                                                                                                                  <  6:193082/92‑1                                                                                                              GGCCATGTTGCGTACCACGCTCGACAGGTCGAAGCTCAGGGTACGCAACATGGCCGGCCCGTCCAACCCGCATGCCCGCGTCGCCACCAGCGACCTGGCGGCCAAAGGCATCGCCGGCAGCTGGGAAGAGGTGCCGGG                                                <  3:84286/138‑1                                                                                                              GGCCATGTTGCGTACCACGCTCGACAGGTCGAAGCTCAGGGTACGCAACATGGCCGGCCCGTCCAACCCGCATGCCCGCGTCGCCACCAGCGACCTGGCGGCCAAAGGCATCGCCGGCAGCTGGGAAGAGGTGCCGGG                                                >  4:84286/1‑138                                                                                                                      TGCGTACCACGCTCGACAGGTCGAAGCTCAGGGTACGCAACATGGCCGGCCCGTCCAACCCGCATGCCCGCGTCGCCACCAGCGACCTGGCGGCCAAAGGCATCGCCGGCAGCTGGGAAGAGGTGCCGGGGCAGATGCCGGACGGCGCG                             >  3:398391/1‑149                                                                                                                                                     GGTACGCAACATGGCCGGCCCGTCCAACCCGCATGCCCGCGTCGCCACCAGCGACCTGGCGGCCAAAGGCATCGCCGGCAGCTGGGAAGAGGTGCCGGGGCAGATGCCGGACGGCGCGGTGATCATCGCTGCCATCACCAGTTGC  <  3:325937/145‑1                                                                                                                                                     GGTACGCAACATGGCCGGCCCGTCCAACCCGCATGCCCGCGTCGCCACCAGCGACCTGGCGGCCAAAGGCATCGCCGGCAGCTGGGAAGAGGTGCCGGGGCAGATGCCGGACGGCGCGGTGATCATCGCTGCCATCACCAGTTGC  >  4:325937/1‑145                                                                                                                                                                                                                                                                                                       TGATCACCGCGCCGTCCGGCATCTGCCCCGGCACCTCTTCCCAGCTGCCGGCGATGCCTTTGGCCGCCAGGTCGCTGGTGGCGACGCGGGCATGCGGGTTGGACGGGCCGGCCATGTTGCGTACCACGCTCGACAGGTCGAAGCTCAGGGTACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2665335‑2665181 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtacgcAACATGGCCGGCCCGTCCAACCCGCATGCCCGCGTCGCCACCAGCGACCTGGCGGCCAAAGGCATCGCCGGCAGCTGGGAAGAGGTGCCGGGGCAGATGCCGGACGGCGCGGTGATCATCGCTGCCATCACCAGTTGC  >  NC_002947/2665218‑2665355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.