New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2786671 =	43 (0.660)	3 (0.050)	3/250	NT	6.5%	intergenic (‑3/‑319)	alx/ahpC	alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit
	?	NC_002947	2786743 =	45 (0.730)					intergenic (‑75/‑247)	alx/ahpC	alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit

TGCACTGGCAAAGAAATGTAACAGCTCCCCATTCGGTATCACGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACAT‑TCAAGGAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2786822‑2786671 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggggcCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCA  >  NC_002947/2786743‑2786829                                                                                                                                                                                                                                                  TGCACTGGCAAAGAAATGTAACAGCTCCCCATTCGGTATCACGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACAT‑TCAAGGA                                                                                              <  2:273490/147‑1   CACTGGCAAAGAAATGTAACAGCTCCCCATTCGGTATCACGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACAT‑TCAAGGAGGGG                                                                                          <  6:197457/149‑1                       AGCTCCCCATTCGGTATCACGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACAT‑TCAAGG                                                                                               >  7:204011/1‑124                       AGCTCCCCATTCGGTATCACGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACAT‑TCAAGG                                                                                               <  8:204011/124‑1                                                                             CCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACAT‑TCAAGGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGC                >  6:79600/1‑149                                                                              CGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACAT‑TCAAGGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCC               >  7:337755/1‑149                                                                                           CGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACAT‑TCAAGGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCA  <  5:79600/149‑1                                                                                                 CCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACATGTCAAGGAG                                                                                             >  1:82609/1‑53                                                                                                 CCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACAT‑TCAAGGAG                                                                                             <  2:82609/52‑1                                                                                                                                                                                                                                                  TGCACTGGCAAAGAAATGTAACAGCTCCCCATTCGGTATCACGGGCAAACGGGTCTACGCTCAAGCCCATGTGATACCGGGCCCCTCTGACGGCTGCCAAGCCGCCATGTCGGATCACTGTTGCCTTGCAACGTCGACAT‑TCAAGGAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2786822‑2786671 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggggcCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCA  >  NC_002947/2786743‑2786829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.