New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2786671 =	43 (0.660)	3 (0.050)	3/250	NT	6.5%	intergenic (‑3/‑319)	alx/ahpC	alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit
	?	NC_002947	2786743 =	45 (0.730)					intergenic (‑75/‑247)	alx/ahpC	alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit

CGCATTTCAATTTCCCGGTCGTGGCGGTGCAGCACGCCCAGGTCGAGCACCAGCAAACCGATGACGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCA  >  NC_002947/2786526‑2786817                                                                                                                                                  |                                                                                                                                                    cgcATTTCAATTTCCCGGTCGTGGCGGTGCAGCACGCCCAGGTCGAGCACCAGCAAACCGATGACGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGccc                                                                                                                                                  >  3:112640/1‑149 (MQ=255)     tttCAAATTCCCGGTCGTGGCGGTGCAGCACGCCCAGGTCGAGCACCAGCAAACAGATGACGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCcctcc                                                                                                                                              <  8:183312/149‑1 (MQ=255)          aTTTCCCGGTCGTGGCGGTGCAGCACGCCCAGGTCGAGCACCAGCAAACCGATGACGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGaa                                                                                                                                         >  5:36887/1‑149 (MQ=255)                      tGGCGGTGCAGCACGCCCAGGTCGAGCACCAGCAAACCGATGACGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGc                                                                                                                             <  1:171144/149‑1 (MQ=255)                       ggCGGTGCAGCACGCCCAGGTCGAGCACCAGCAAACCGATGACGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGc                                                                                                                             >  1:366807/1‑148 (MQ=255)                               agcaCGCCCAGGTCGAGCACCAGCAAACCGATGACGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACa                                                                                                                    <  3:187167/149‑1 (MQ=255)                                gcaCGCCCAGGTCGAGCACCAGCAAACCGATGACGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGATGTTGCAAGGCAACAg                                                                                                                   >  6:156172/1‑149 (MQ=255)                                                 aCCAGCAAACCGATGACGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCCAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑ggcggc                                                                                                 >  3:294523/1‑149 (MQ=255)                                                   cAGCAAACCGATGACGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCtt                                                                                               >  5:167285/1‑149 (MQ=255)                                                   cAGCAAACCGATGACGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCtt                                                                                               <  6:169200/149‑1 (MQ=255)                                                      cAAACCGATGACGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGGGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGc                                                                                            <  8:153155/149‑1 (MQ=255)                                                           tgaactctgcactggcaaagaaatgtaacagctccccattcggtatcacgggcaaacgggtctacgctcaagcccatgtgataccggGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCg                                                                                       <  5:79600‑M1/62‑1 (MQ=255)                                                           cGATGACGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCg                                                                                       >  2:355605/1‑149 (MQ=255)                                                            gATGACGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGt                                                                                      >  2:155361/1‑149 (MQ=255)                                                                aCGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCag                                                                                   <  5:39006/148‑1 (MQ=255)                                                                      gCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGc                                                                             <  6:167285/148‑1 (MQ=255)                                                                        ggcaaagaaatgtaacagctccccattcggtatcacgggcaaacgggtctacgctcaagcccatgtgataccggGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCg                                                                          >  7:337755‑M1/75‑149 (MQ=255)                                                                        cATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCg                                                                          >  1:387970/1‑149 (MQ=255)                                                                         gcaaagaaatgtaacagctccccattcggtatcacgggcaaacgggtctacgctcaagcccatgtgataccggGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCgg                                                                         >  6:79600‑M1/74‑149 (MQ=255)                                                                               acCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGt                                                                        >  2:248267/1‑144 (MQ=255)                                                                               acCAGCCACAACCACGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATCGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGt                                                                        <  1:248267/145‑1 (MQ=255)                                                                                ccAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATcaca                                                                  >  1:314006/1‑149 (MQ=255)                                                                                 cAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACAt                                                                 >  2:35235/1‑149 (MQ=255)                                                                                 cAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGAAGCCGTCAGAGGGGCCCGGTATCACAt                                                                 >  6:386560/1‑149 (MQ=255)                                                                                    ccACAACCAGGCGCTGGTACCGAGGACAGGTGGTGTGAGGAATGATTGCAGAGCTGTCATGAGCCGCTCCTTGAATGTCGACGTTGCAAGGCACCAGTGAGGCGCCAT‑GGCGGGTTGGCAGCGGTGAGAGGGGCCCGGTATCACCTggg                                                              >  8:277409/1‑149 (MQ=255)                                                                                      acaACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCt                                                            <  6:36887/149‑1 (MQ=255)                                                                                       caACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCtt                                                           <  2:387970/149‑1 (MQ=255)                                                                                                gcTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGa                                                  <  1:155361/149‑1 (MQ=255)                                                                                                   ggTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGAccc                                               >  1:393907/1‑149 (MQ=255)                                                                                                           ggACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGccc                                       <  2:366807/149‑1 (MQ=255)                                                                                                               aGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGa                                   >  6:208244/1‑149 (MQ=255)                                                                                                                  tgttgtGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATAc                                <  7:269892/149‑1 (MQ=255)                                                                                                                    ttgtGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGt                                                                        <  1:272441/107‑1 (MQ=255)                                                                                                                    ttgtGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGt                                                                        >  2:272441/1‑107 (MQ=255)                                                                                                                      gtgAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGa                             <  2:314006/148‑1 (MQ=255)                                                                                                                      gtgAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCATGATACCGaa                            >  6:37222/1‑149 (MQ=255)                                                                                                                         aGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATgg                         >  4:100826/1‑149 (MQ=255)                                                                                                                          tgAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGAAGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATggg                        <  4:112640/148‑1 (MQ=255)                                                                                                                            aaTGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGAc                                                 >  3:186517/1‑122 (MQ=255)                                                                                                                            aaTGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGAc                                                 <  4:186517/122‑1 (MQ=255)                                                                                                                            aaTGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATggg                        >  7:111557/1‑147 (MQ=255)                                                                                                                            aaTGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATggg                        >  5:371819/1‑147 (MQ=255)                                                                                                                                aTTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCGCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGATTGGGGAGCt                   <  4:294523/148‑1 (MQ=255)                                                                                                                                aTTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTg                  <  1:355605/149‑1 (MQ=255)                                                                                                                                     agagCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTAGCCCGTGATACCGAATGGGGAGCTGTTACa             <  1:35235/149‑1 (MQ=255)                                                                                                                                         cTGTCATGAGCCCCTCCTTGAATATCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATggg                        <  2:388171/134‑1 (MQ=255)                                                                                                                                         cTGTCATGAGCCCCTCCTTGAATATCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATggg                        >  1:388171/1‑134 (MQ=255)                                                                                                                                              aTGAGCCCGTCCTTGTATGTCGACGTTGCAAGGCAAGAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCGGGTATCACATGGTCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGc    <  5:37222/149‑1 (MQ=255)                                                                                                                                                 aGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCa  <  3:274850/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CGCATTTCAATTTCCCGGTCGTGGCGGTGCAGCACGCCCAGGTCGAGCACCAGCAAACCGATGACGATGGCCATGAACACCAGCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACAT‑GGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCA  >  NC_002947/2786526‑2786817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.