| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3041377 = | 49 (0.750) | 5 (0.080) | 5/252 | NT | 9.9% | coding (615/819 nt) | PP_2653 | Cro/CI family transcriptional regulator |
| ? | NC_002947 | 3041425 = | 44 (0.710) | coding (567/819 nt) | PP_2653 | Cro/CI family transcriptional regulator | |||||
GACACTGCTGTGCCCCGGTGGTCTGGGTGATCACCTGGCCAACGCGCCGGAAATCCGCGCTGCTGCCTGGCAACGTGCCTCCAGGGAGGCCGCAGGCAATCCGGCACTGGCAGCGCGCTTGCGCGACTTGCCGGCCCCGGCAAGCCCGTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3041530‑3041377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccagTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACAC > NC_002947/3041425‑3041570 GACACTGCTGTGCCCCGGTGGTCTGGGTGATCACCTGGCCAACGCGCCGGAAATCCGCGCTGCTGCCTGGCAACGTGCCTCCAGGGAGGCCGCAGGCAATCCGGCACTGGCAGCGCGCTTGCGCGACTTGCCGGCCCCGGCAAGCCCGT < 7:269903/149‑1 ACTGCTGTGCCCCGGTGGTCTGGGTGATCACCTGGCCAACGCGCCGGAAATCCGCGCTGCTGCCTGGCAACGTGCCTCCAGGGAGGCCGCAGGCAATCCGGCACTGGCAGCGCGCTTGCGCGACTTGCCGGCCCCGGCAAGCCCGTGC > 6:70518/1‑148 CTGCTGTGCCCCGGTGGTCTGGGTGATCACCTGGCCAACGCGCCGGAAATCCGCGCTGCTGCCTGGCAACGTGCCTCCAGGGAGGCCGCAGGCAATCCGGCACTGGCAGCGCGCTTGCGCGACTTGCCGGCCCCGGCAAGCCCGTGCCA < 5:347483/149‑1 AATCCGGCACTGGCAGCGCGCTTGCGCGACTTGCCGGCCCCGGCAAGCCC‑‑‑‑‑‑GTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCA > 8:235392/1‑147 CGGCACTGGCAGCGCGCTTGCGCGACTTGCCGGCCCCGGCAAGCCCGTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTG < 7:91408/128‑1 CGGCACTGGCAGCGCGCTTGCGCGACTTGCCGGCCCCGGCAAGCCCGTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTG > 8:91408/1‑128 GGCACTGGCAGCGCGCTTGCGCGACTTGCCGGCCCCGGCAAGCCC‑‑‑‑‑‑GTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGT > 5:151955/1‑149 CACTGGCAGCGCGCTTGCGCGACTTGCCGGCCCCGGCAAGCCCGTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAG > 2:87050/1‑149 CCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGG < 1:141807/77‑1 CCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGG > 2:141807/1‑77 CAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACAC > 3:94867/1‑149 GACACTGCTGTGCCCCGGTGGTCTGGGTGATCACCTGGCCAACGCGCCGGAAATCCGCGCTGCTGCCTGGCAACGTGCCTCCAGGGAGGCCGCAGGCAATCCGGCACTGGCAGCGCGCTTGCGCGACTTGCCGGCCCCGGCAAGCCCGTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3041530‑3041377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccagTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAGCAGTGTCTGCAGCAGGTTGAGGCCGGTTGCCGGCTGTGCGCTGACAC > NC_002947/3041425‑3041570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |