| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3041377 = | 49 (0.750) | 5 (0.080) | 5/252 | NT | 9.9% | coding (615/819 nt) | PP_2653 | Cro/CI family transcriptional regulator |
| ? | NC_002947 | 3041425 = | 44 (0.710) | coding (567/819 nt) | PP_2653 | Cro/CI family transcriptional regulator | |||||
GGGTCGGCGGGGATCAGGTGTTCGATGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAG > NC_002947/3041231‑3041523 | gtgtcagcgcacagccggcaaccggcctcaacctgctgcagacactgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatccggcaCTg > 3:94867‑M1/147‑149 (MQ=255) ggATCAGGTGTTCGATGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCtt > 7:135931/1‑149 (MQ=255) gATCAGGTGTTCGATGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTg > 7:92973/1‑149 (MQ=255) aGGTGTTCGATGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCg < 3:152912/148‑1 (MQ=255) gtgtTCGATGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCt < 4:49475/131‑1 (MQ=255) gtgtTCGATGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCt > 3:49475/1‑131 (MQ=255) ttCGATGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCg > 7:54799/1‑149 (MQ=255) cGATGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCgg < 6:184552/148‑1 (MQ=255) cGATGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCgg > 4:347273/1‑148 (MQ=255) cGATGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGCCCCgg < 4:278293/148‑1 (MQ=255) gATGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGc > 5:386402/1‑148 (MQ=255) aTGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCaa < 3:382232/149‑1 (MQ=255) tGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAg > 7:156574/1‑149 (MQ=255) aCTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAg > 8:48058/1‑149 (MQ=255) cACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAgcgcg > 5:265706/1‑149 (MQ=255) cACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAgcgcg > 6:370476/1‑149 (MQ=255) cGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCt < 8:92973/149‑1 (MQ=255) ggTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTg > 2:16608/1‑149 (MQ=255) tGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGc > 2:374727/1‑148 (MQ=255) actgctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatccggcaC‑‑‑‑‑‑GGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGcc > 5:151955‑M1/104‑149 (MQ=255) ctgtgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatccggcaCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTg > 2:87050‑M1/100‑149 (MQ=255) aTCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTg > 3:151887/1‑149 (MQ=255) tgccccggtggtctgggtgatcacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatccggcaC‑‑‑‑‑‑GGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGAtt > 8:235392‑M1/97‑147 (MQ=255) gCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTg < 3:347273/149‑1 (MQ=255) tGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCt < 8:54799/149‑1 (MQ=255) ccAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGc > 5:352269/1‑149 (MQ=255) cAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCg > 4:150250/1‑149 (MQ=255) cAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCg < 5:136000/149‑1 (MQ=255) aaaGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCgg > 5:70518/1‑149 (MQ=255) ggtgAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTccc > 6:174229/1‑149 (MQ=255) gAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTg > 7:258192/1‑148 (MQ=255) gAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTg > 2:12439/1‑148 (MQ=255) cacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatccggcaCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCg < 7:91408‑M1/53‑1 (MQ=255) cacctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatccggcaCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCg > 8:91408‑M1/76‑128 (MQ=255) aaCGTGGACAGGAACCGCAGCTCACCATAGGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGa < 5:101328/149‑1 (MQ=255) aaCGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTgg < 1:374727/148‑1 (MQ=255) aaCGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGa < 7:48058/149‑1 (MQ=255) aaCGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGa < 3:150250/149‑1 (MQ=255) cctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatccggcaCTgg > 2:141807‑M1/74‑77 (MQ=255) cctggccaacgcgccggaaatccgcgctgctgcctggcaacgtgcctccagggaggccgcaggcaatccggcaCTgg < 1:141807‑M1/4‑1 (MQ=255) cGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAgg < 8:156574/149‑1 (MQ=255) ggAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGGGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGGCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGc < 6:386402/149‑1 (MQ=255) gAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGc > 5:64434/1‑148 (MQ=255) gCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAgg > 1:164831/1‑147 (MQ=255) gCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGgca < 1:107658/149‑1 (MQ=255) cATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGcgcg < 6:325712/148‑1 (MQ=255) cATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGcgcg > 5:325712/1‑148 (MQ=255) ggggTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTc > 4:35415/1‑149 (MQ=255) ggTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCg < 2:319537/149‑1 (MQ=255) tgtTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGgc < 6:352269/149‑1 (MQ=255) gggTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGcc < 6:265706/149‑1 (MQ=255) agcagcagAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGt < 6:64434/148‑1 (MQ=255) gagGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGCCCTCCCTGGAGGCACGTTGCCACGCCGCAGCGCGGATTTCCGGCACGATGGCCAGCTGagaacc > 3:16795/1‑143 (MQ=255) tGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGacca > 6:89785/1‑149 (MQ=255) gCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGaccacc > 1:249983/1‑149 (MQ=255) cTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCg > 6:37678/1‑149 (MQ=255) tcgtcATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCgggg < 2:164831/149‑1 (MQ=255) tcgtcATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCgggg > 2:402422/1‑149 (MQ=255) tcgtcATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCggg < 1:12439/148‑1 (MQ=255) aTCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCAcag < 1:402422/149‑1 (MQ=255) | GGGTCGGCGGGGATCAGGTGTTCGATGCGCAGTGACTGCACGGTGACATCCTGCGGCATGCCAAAGGTGGTGAACGTGGACAGGAACCGCAGCTCACCATACGGGGTGTTCACGCGGGTCAGCAGCAGAGGGGTGGCTGTCGTCATCTGGCACGGGCTTGCCGGGGCCGGCAAGTCGCGCAAGCGCGCTGCCAGTGCCGGATTGCCTGCGGCCTCCCTGGAGGCACGTTGCCAGGCAGCAGCGCGGATTTCCGGCGCGTTGGCCAGGTGATCACCCAGACCACCGGGGCACAG > NC_002947/3041231‑3041523 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |