New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3425260	62 (0.950)	4 (0.060)	4/250	NT	6.7%	coding (337/348 nt)	PP_3040	holin
	?	NC_002947	= 3425359	53 (0.860)					intergenic (+88/‑77)	PP_3040/PP_3041	holin/hypothetical protein

ATGCTGCTGTACTCGGCGGGCATGTCGATGTGGTCGGCCAGTGCCATTGGTTGTCTCACTGCCACTGCCGGTGCGGATGTGGCCATAGGGTTGTACAAGCGTTGGGTCGCCAAGCGGCTGGGCGTCTGCGATGTCACGTCCCGTAGCGGCGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3425107‑3425260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaacTGTCCGCTAGCGAAGAGCCGCGGGTTTCCTGCCCCGTAACCCGGCCATATCGCCAGGGTCCCCGACCCCACCGAGGCTGGCGATCGGGTCACTGTCCAGGTTCGCCGCTACGGGACGTGACATCGCAGACGCCCAGCCGCTTGG  <  NC_002947/3425359‑3425216                                                                                                                                                                                                                                                                                                            ATGCTGCTGTACTCGGCGGGCATGTCGATGTGGTCGGCCAGTGCCATTGGTTGTCTCACTGCCACTGCCGGTGCGGATGTGGCCATAGGGTTGTACAAGCGTTGGGTCGCCAAGCGGCTGGGCGTCTGCGATGTCACGTCCCGTAGCGG                                                                                                                                                       >  5:330516/1‑149                                                        TCACTGCCACTGCCGGTGCGGATGTGGCCATAGGGTTGTACAAGCGTTGGGTCGCCAAGCGGCTGGGCGTCTGCGATGTCACGTCCCGTAGCGGCGAACTGTCCGCTAGCGAAGAGCCGCGGGTTTCCTGCCCCGTAACCCGGCCATAT                                                                                                >  2:365370/1‑149                                                                       GTGCGGATGTGGCCATAGGGTTGTACAAGCGTTGGGTCGCCAAGCGGCTGGGCGTCTGCGATGTCACGTCCCGTAGCGGCG                                                                                                                                                     <  7:179141/81‑1                                                                       GTGCGGATGTGGCCATAGGGTTGTACAAGCGTTGGGTCGCCAAGCGGCTGGGCGTCTGCGATGTCACGTCCCGTAGCGGCG                                                                                                                                                     >  8:179141/1‑81                                                                                                                AAGCGGCTGGGCGTCTGCGATGTCACGTCCCGTAGCGGCGAACTGTCCGCTAGCGAAGAGCCGCGGGTTTCCTGCCCCGTAACCCGGCCATATCGCCAGGGTCCCCGACCCCACCGAGGCTGGCGATCGGGTCACTGTCCAGGTTCGCC                                        >  3:333285/1‑149                                                                                                                 AGCGGCTGGGCGTCTGCGATGTCACGTCCCGTAGCGGCGAACTGTCCGCTAGCGAAGAGCCGCGGGTTTCCTGCCCCGTAACCCGGCCATATCGCCAGGGTCCCCGACCCCACCGAGGCTGGCGATCGGGTCACTGTCCAGGTTCGCCG                                       <  4:333285/149‑1                                                                                                                      CTGGGCGTCTGCGATGTCACGTCCCGTAGCGGCGAACTGTCCGCTAGCGAAGAGCCGCGGGTTTCCTGCCCCGTAACCCGGCCATATCGCCAGGGTCCCCGACCCCACCGAGGCTGGCGATCGGGTCACTGTCCAGGTTCGCCGCTACG                                  <  1:365370/149‑1                                                                                                                                                      CGAACTGTCCGCTAGCGAAGAGCCGCGGGTTTCCTGCCCCGTAACCCGGCCATATCGCCAGGGTCCCCGACCCCACCGAGGCTGGCGATCGGGTCACTGTCCAGGTTCGCCGCTACGGGACGTGACATCGCAGACGCCCAGCCGCTTGG  <  4:34327/149‑1                                                                                                                                                                                                                                                                                                            ATGCTGCTGTACTCGGCGGGCATGTCGATGTGGTCGGCCAGTGCCATTGGTTGTCTCACTGCCACTGCCGGTGCGGATGTGGCCATAGGGTTGTACAAGCGTTGGGTCGCCAAGCGGCTGGGCGTCTGCGATGTCACGTCCCGTAGCGGCGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3425107‑3425260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaacTGTCCGCTAGCGAAGAGCCGCGGGTTTCCTGCCCCGTAACCCGGCCATATCGCCAGGGTCCCCGACCCCACCGAGGCTGGCGATCGGGTCACTGTCCAGGTTCGCCGCTACGGGACGTGACATCGCAGACGCCCAGCCGCTTGG  <  NC_002947/3425359‑3425216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.