New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3425260 | 62 (0.950) | 4 (0.060) | 4/250 | NT | 6.7% | coding (337/348 nt) | PP_3040 | holin |
? | NC_002947 | = 3425359 | 53 (0.860) | intergenic (+88/‑77) | PP_3040/PP_3041 | holin/hypothetical protein |
CCAAGCGGCTGGGCGTCTGCGATGTCACGTCCCGTAGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAGCGCCTTCGCTGCTCGCATAGGGAGATCACCCAGCTACATCA > NC_002947/3425216‑3425505 | ccAAGCGGCTGGGCGTCTGCGATGTCACGTCCCGTAGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAgttcg < 4:34327‑M2/149‑6 (MQ=255) gCGTCTGCGATGTCACGTCCCGTAGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTg > 1:47664/1‑148 (MQ=255) tCTGCGATGTCACGTCCCGTAGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAAt > 1:147116/1‑149 (MQ=255) gCGATGTCACGTCCCGTAGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTa > 3:367055/1‑139 (MQ=255) gCGATGTCACGTCCCGTAGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTa < 4:367055/139‑1 (MQ=255) cGATGTCACGTCCCGTCGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGTCCCTGGCGATATGGCCGGGTTACGGGTCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTc < 1:337931/147‑1 (MQ=255) gATGTCACGTCCCGTAGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAAc < 2:326517/149‑1 (MQ=255) tGTCACGTCCCGTAGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCt < 3:34327/149‑1 (MQ=255) cGTCCCGTAGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAAc > 5:293936/1‑142 (MQ=255) cGTCCCGTAGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAAc < 6:293936/142‑1 (MQ=255) tCCCGTAGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGTCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGatgaaa > 8:250330/1‑149 (MQ=255) cGTAGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAgttcgccgctacgggacgtgacatcgcagacgcccag < 1:365370‑M2/149‑38 (MQ=255) gTAGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGttgaaattga < 4:123078/149‑1 (MQ=255) tAGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGttgaaattgaa < 7:4931/149‑1 (MQ=255) cggcgAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAgttcgccgctacgggacgtgacatcgcagacgcccagccgct < 4:333285‑M2/149‑43 (MQ=255) ggcgAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAgttcgccgctacgggacgtgacatcgcagacgcccagccgctt > 3:333285‑M2/1‑106 (MQ=255) ggcgAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGgt > 4:235187/1‑149 (MQ=255) gcgAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGGTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGgtt > 1:331574/1‑149 (MQ=255) ccTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTgttgg > 7:311403/1‑149 (MQ=255) ggACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCGTACTGAAATTCAACCTGTTGAAATTGAAAGGTTgttggtt > 4:236418/1‑148 (MQ=255) gACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTgttggtt < 5:50409/147‑1 (MQ=255) aGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGaaa > 7:188582/1‑148 (MQ=255) tGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATAc > 2:167058/1‑149 (MQ=255) tGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATAc < 7:166158/149‑1 (MQ=255) gcGATCGGCAGCCTCGGTGGGGTCGTGGACCCTGGAGATATGGCCGGGTTACGGTGCAGGAAACCCGCGTCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCAtt < 5:256192/148‑1 (MQ=255) ccGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCAtt < 8:188582/149‑1 (MQ=255) cTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGc > 7:208913/1‑149 (MQ=255) ggTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTc < 3:235187/148‑1 (MQ=255) ggTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCa > 1:101566/1‑149 (MQ=255) ggggACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGAtt > 1:318887/1‑149 (MQ=255) ggACCCTGGCGATATGGCCGGGTTACGGGGCAGGAACCCCGCGGCTCTTCGCTAACGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTc > 1:256439/1‑148 (MQ=255) aCCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGaa > 8:77715/1‑149 (MQ=255) aCCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGaa < 2:147116/149‑1 (MQ=255) ccTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGa < 4:62446/127‑1 (MQ=255) ccTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGa > 3:62446/1‑127 (MQ=255) tGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAActtc > 1:232275/1‑149 (MQ=255) gCGATATGGCCTGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAActtctt < 8:116961/149‑1 (MQ=255) cGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAActtctt < 7:250330/148‑1 (MQ=255) cGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTg < 1:167058/149‑1 (MQ=255) gATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGt > 8:353388/1‑149 (MQ=255) gATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGt < 2:331574/149‑1 (MQ=255) atatGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAgttcgccgctacgggacgtgacatcgcagacgcccagccgcttggcgacccaacgcttgtacaaccctatggccacatccgcaccggcagtggcagtga > 2:365370‑M2/1‑50 (MQ=255) tatGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCCCATGACGGATTCGAACTTCTTGTCa < 6:386971/149‑1 (MQ=255) tGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCaaa < 5:249613/149‑1 (MQ=255) cGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAgc < 7:77715/149‑1 (MQ=255) cGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAgc > 2:20713/1‑149 (MQ=255) cGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAgc < 2:101566/149‑1 (MQ=255) cGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAGCGCCTTCg < 8:311403/149‑1 (MQ=255) ggCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGATATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAGCGCCTTCgctg > 1:325939/1‑149 (MQ=255) aaaCCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAGCGCCTTCGCTGCTCGCa < 2:47664/149‑1 (MQ=255) ccGCTGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGTTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAGCTCCTTCGCTGCTCGCATAgg > 2:137514/1‑149 (MQ=255) ccGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAGCGCCTTCGCTGCACGCATAgg > 6:412818/1‑149 (MQ=255) ccGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACAATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAGCGCCTTCGCTGCTCGCATAgg > 7:285647/1‑149 (MQ=255) cgcgGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAGCGCCTTCGCTGCTCGCATAggg > 4:180188/1‑149 (MQ=255) gcgGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAGCGCCTTCGCTGCTCGCATAGGga < 7:353388/149‑1 (MQ=255) cgGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAGCGCCTTCGCTGCTCGCATAGGgag < 2:232275/149‑1 (MQ=255) gCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAGCGCCTTCGCTGCTCGCATAGGGAGATCACCCAg > 5:378056/1‑149 (MQ=255) cGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAGCGCCTTCGCTGCTCGCATAGGGAGATCACCCAGCTACa > 4:163066/1‑149 (MQ=255) aCAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAGCGCCTTCGCTGCTCGCATAGGGAGATCACCCAGCTACATCa > 5:196813/1‑149 (MQ=255) | CCAAGCGGCTGGGCGTCTGCGATGTCACGTCCCGTAGCGGCGAACCTGGACAGTGACCCGATCGCCAGCCTCGGTGGGGTCGGGGACCCTGGCGATATGGCCGGGTTACGGGGCAGGAAACCCGCGGCTCTTCGCTAGCGGACAGTTCGCCAGCTTACTGAAATTCAACCTGTTGAAATTGAAAGGTTGTTGGTTGAAATACCATTGAAATGGAGGGCTCATGACGGATTCGAACTTCTTGTCAAAGAGCGCCTTCGCTGCTCGCATAGGGAGATCACCCAGCTACATCA > NC_002947/3425216‑3425505 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |