New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3612481 =	61 (0.940)	4 (0.060)	4/254	NT	6.6%	coding (1203/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	3612513 =	54 (0.860)					coding (1171/3396 nt)	mcoA	Mn(II) copper oxidase A

GCCACTCCCCGGCCGAAAGCGACGGCTTTGCCAACGCGTACTTCTTCCCCGGCCAGTACTACGACTACCGCTGGCCGGTGCAGCTGGCCGGCTACGACACCATCAACACCCGTGCCCAGGACCCGCGTGCCGCTTTCCCCTGCTCGCCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3612632‑3612481 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCGTAGTACTGGCCGGGGAAGAAGTACGCGTTGGCAAAGCCGTCGCTTTCGGCCGGGGAGTGGCCGTTGTGCTCGTGGGTCGAAATGGTATG  >  NC_002947/3612513‑3612660                                                                                                                                                                                                                                                                                                              GCCACTCCCCGGCCGAAAGCGACGGCTTTGCCAACGCGTACTTCTTCCCCGGCCAGTACTACGACTACCGCTGGCCGGTGCAGCTGGCCGGCTACGACACCATCAACACCCGTGCCCAGGACCCGCGTGCCGCTTTCCCCTGCTCGCCG                                                                                                                                                         <  6:68938/149‑1   CACTCCCCGGCCGAAAGCGACGGCTTTGCCAACGCGTACTTCTTCCCCGGCCAGTACTACGACTACCGCTGGCCGGTGCAGCTGGCCGGCTACGACACCATCAACACCCGTGCCCAGGACCCGCGTGCCGCTTTCCCCTGCTCGCCGGG                                                                                                                                                       <  4:306355/149‑1    ACTCCGCGGCCGAAAGCGACGGCGTTGCCAACGCGTACTTCTTCCCCGGCCAGTACTACGACTACCGCTTGCCGGTGCAGCTGGCCGGCTACGACACCATCAACACCCGTGCCCAGGACCCGCGTGCCGCTTTCCCCTGCTCGCCGGGT                                                                                                                                                      <  8:64759/149‑1                                                                                                                    CCAGGACCCGCGTGCCGCTTTCCCCTGCTCGCCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCGTA                                                                                         <  1:246045/98‑1                                                                                                                    CCAGGACCCGCGTGCCGCTTTCCCCTGCTCGCCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCGTA                                                                                         >  2:246045/1‑98                                                                                                                     CAGGACCCGCGTGCCGCTTTCCCCTGCTCGCCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCGAAGTACTGGCTGGGGAAGAAGTACGCGTTGGCAAAGCCGTCGCTTTCGGCCGGc                                     >  4:107286/1‑148                                                                                                                        GACCCGCGTGCCGCTTTCCCCTGCTCGCCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCGTAGTACTGGCCGGGGAAGAAGTACGCGTTGGCAAAGCCGTCGCTTTCGGCCGGGGAG                                  >  6:355824/1‑149                                                                                                                                                     GGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCGTAGTACTGGCCGGGGAAGAAGTACGCGTTGGCAAAGCCGTCGCTTTCGGCCGGGGAGTGGCCGTTGTGCTCGTGGGTCGAAATGGT     <  5:68938/149‑1                                                                                                                                                        TCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCGTAGTACTGGCCGGGGAAGAAGTACGCGTTGGCAAAGCCGTCGCTTTCGGCCGGGGAGTGGCCGTTGTGCTCGTGGGTCGAAATGGTATG  <  8:155199/149‑1                                                                                                                                                                                                                                                                                                              GCCACTCCCCGGCCGAAAGCGACGGCTTTGCCAACGCGTACTTCTTCCCCGGCCAGTACTACGACTACCGCTGGCCGGTGCAGCTGGCCGGCTACGACACCATCAACACCCGTGCCCAGGACCCGCGTGCCGCTTTCCCCTGCTCGCCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3612632‑3612481 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCGTAGTACTGGCCGGGGAAGAAGTACGCGTTGGCAAAGCCGTCGCTTTCGGCCGGGGAGTGGCCGTTGTGCTCGTGGGTCGAAATGGTATG  >  NC_002947/3612513‑3612660

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.