| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4114305 = | 38 (0.580) | 3 (0.050) | 3/238 | NT | 8.9% | intergenic (+52/+94) | PP_3619/ycaO | hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor |
| ? | NC_002947 | 4114376 = | 27 (0.460) | intergenic (+123/+23) | PP_3619/ycaO | hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor | |||||
ATCGCCACCTGCGCCTGATCGACAGCTACAAGAAGCTGCACGCGGCCCGGGCCAAGTTCGCCTGACAGGCGCTGCGCCCAATCATCGCCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4114463‑4114305‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctggcttgccgGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGACACTGCC > NC_002947/4114376‑4114518 ATCGCCACCTGCGCCTGATCGACAGCTACAAGAAGCTGCACGCGGCCCGGGCCAAGTTCGCCTGACAGGCGCTGCGCCCAATCATTGCCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGC > 5:252719/1‑149ATCGCCACCTGCGCCTGATCGACAGCTACAAGAAGCTGCACGCGGCCCGGGCCAAGTTCGCCTGACAGGCGCTGCGCCCAATCATTGCCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGC < 6:252719/149‑1 GCCACCTGCGCCTGATCGACAGCTACAAGAAGCTGCACGCGGCCCGGGCCAAGTTCGCCTGACAGGCGCTGCGCCCAATCATCGCCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGG < 1:185104/149‑1 GCCACCTGCGCCTGATCGACAGCTACAAGAAGCTGCACGCGGCCCGGGCCAAGTTCGCCTGACAGGCGCTGCGCCCAATCATCGCCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGG < 4:46779/149‑1 GCCACCTGCGCCTGATCGACAGCTACAAGAAGCTGCACGCGGCCCAGGCCAAGTTCGCCTGACAGGCGCTGCGCCCAATCATCGCCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTG < 7:304080/148‑1 AAGCTGCACGCGGCCCGGGCCAAGTTCGCCTGACAGGCGCTGCGCCCAATCATCGCCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGC > 5:318630/1‑121 AAGCTGCACGCGGCCCGGGCCAAGTTCGCCTGACAGGCGCTGCGCCCAATCATCGCCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGC < 6:318630/121‑1 GCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGAT > 2:87734/1‑149 GTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGGCGATGATTGGGCGCA < 3:323318/68‑1 GTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCGGCGATGATTGGGCGCA > 4:323318/1‑68 GCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGAC < 8:30799/149‑1 GCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGA > 3:170690/1‑148 GGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGACACT < 3:46779/149‑1 GGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGACACT < 4:243480/149‑1 GCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGACACTGCC < 5:173426/147‑1 ATCGCCACCTGCGCCTGATCGACAGCTACAAGAAGCTGCACGCGGCCCGGGCCAAGTTCGCCTGACAGGCGCTGCGCCCAATCATCGCCGGCAAGCCAGCGCCACAGGTATTGCACCGCTCTTGAGATCTGTGCCGAACCTGTGGACGCTGGCTTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4114463‑4114305‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctggcttgccgGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGACACTGCC > NC_002947/4114376‑4114518 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |