New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4114305 =	38 (0.580)	3 (0.050)	3/238	NT	8.9%	intergenic (+52/+94)	PP_3619/ycaO	hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor
	?	NC_002947	4114376 =	27 (0.460)					intergenic (+123/+23)	PP_3619/ycaO	hypothetical protein/ribosomal protein S12 methylthiotransferase accessory factor

CTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGACACTGCC  >  NC_002947/4114240‑4114518                                                                                                                                            |                                                                                                                                               cTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACACGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGgc                                                                                                                                    >  7:326038/1‑149 (MQ=255)                 accaccTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGc                                                                                                                    <  7:91192/149‑1 (MQ=255)                 accaccTGAAGTGGAAAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTCGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGc                                                                                                                    >  8:304560/1‑149 (MQ=255)                         aaGTGTATAGCAACAGAACGCTAGGCGCCTGGAGGGCAACGCGGCAAGCCAGCGCCCACAGGTGC‑‑GGCACACATCTCAAGCGCGGTGCAATACCTGTGGCG‑CCGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTg                                                                                                             <  1:286562/148‑1 (MQ=255)                         aaGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGGGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTgg                                                                                                            <  5:391754/149‑1 (MQ=255)                         aaGTGGATAGGAAGACAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAACAGCGGTGCAATACCTGTGGCGCCTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACtt                                                                                                              <  1:89470/148‑1 (MQ=255)                               aTAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTCGAGGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCg                                                                                                        >  1:320446/1‑149 (MQ=255)                                      gagaACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTg                                                                                               >  6:74122/1‑149 (MQ=255)                                             cTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGAGTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGcttc                                                                                        >  3:47164/1‑149 (MQ=255)                                                tGCACCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTg                                                                                     <  5:307739/149‑1 (MQ=255)                                                     cTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGcttct                                                                                       >  3:8347/1‑142 (MQ=255)                                                          tGGCAAGGCGCCATGCCAGCGTCCACAGGTTG‑‑GGCACATATCTCATGAGCGGTGCAATACGTGTGGCG‑GTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCg                                                                            <  2:320446/148‑1 (MQ=255)                                                             cAACGCGGCAAGCCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGAt                                                                          >  6:173426/1‑147 (MQ=255)                                                              aaCGCGGCAAGCCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAg                                                                       >  1:183995/1‑149 (MQ=255)                                                               aCGCGGCAAGCCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAgg                                                                      >  3:243480/1‑149 (MQ=255)                                                                        GCCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGctt                                                                                         >  5:318630‑M1/1‑121 (MQ=255)                                                                        GCCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGctt                                                                                         <  6:318630‑M1/121‑1 (MQ=255)                                                                         CCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGc                                                            <  4:46779‑M1/149‑1 (MQ=255)                                                                         CCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGc                                                            <  1:185104‑M1/149‑1 (MQ=255)                                                                          CAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCTGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGc                                                            <  7:304080‑M1/148‑1 (MQ=255)                                                                            GCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCAATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGAt                                                         >  5:252719‑M1/1‑149 (MQ=255)                                                                            GCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCAATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGAt                                                         <  6:252719‑M1/149‑1 (MQ=255)                                                                               gcgccacaggtattgcaccgctcttgagatctgtgccgaacctgtggacgctggcttgccgGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGAt                                                         >  2:87734‑M2/62‑149 (MQ=255)                                                                                      gTTC‑‑GGCACAGATCTCAAGAGCGGTGAAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTc                                               >  1:12666/1‑149 (MQ=255)                                                                                        gtattgcaccgctcttgagatctgtgccgaacctgtggacgctggcttgccgGCGATGATTGGGCGCa                                                                                                                                 >  4:323318‑M2/53‑68 (MQ=255)                                                                                        gtattgcaccgctcttgagatctgtgccgaacctgtggacgctggcttgccgGCGATGATTGGGCGCa                                                                                                                                 <  3:323318‑M2/16‑1 (MQ=255)                                                                                             gCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTc                                               >  8:98133/1‑144 (MQ=255)                                                                                             gCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTc                                               <  7:98133/144‑1 (MQ=255)                                                                                                      tcAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTgg                                 >  7:279838/1‑149 (MQ=255)                                                                                                       cAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGt                                >  7:331484/1‑149 (MQ=255)                                                                                                        aaGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAg                                                     <  3:146012/127‑1 (MQ=255)                                                                                                        aaGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAg                                                     >  4:146012/1‑127 (MQ=255)                                                                                                        aaGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTc                               >  7:30799/1‑149 (MQ=255)                                                                                                           agCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCTGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCggg                            <  8:304080/149‑1 (MQ=255)                                                                                                                tGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAg                       <  5:74122/149‑1 (MQ=255)                                                                                                                   aaTACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCATCTTTTAGCTGTCGATCAGGCGCAGGTGGAGATCAAGGCCTTCGAGATTCATGCTGGTCTGGGTCAGGc                     >  8:366530/1‑148 (MQ=255)                                                                                                                       ccTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATgg                <  8:331484/149‑1 (MQ=255)                                                                                                                         tgtgGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCAt                  >  6:125564/1‑145 (MQ=255)                                                                                                                         tgtgGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCAt                  <  5:125564/145‑1 (MQ=255)                                                                                                                         tgtgGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATgg                >  5:404602/1‑147 (MQ=255)                                                                                                                                gctggcttgccgGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGac        <  8:30799‑M2/137‑1 (MQ=255)                                                                                                                                gctggcttgccgGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGa         >  3:170690‑M2/13‑148 (MQ=255)                                                                                                                                   ggcttgccgGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGACACt     <  4:243480‑M2/140‑1 (MQ=255)                                                                                                                                   ggcttgccgGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGACACt     <  3:46779‑M2/140‑1 (MQ=255)                                                                                                                                        gccgGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGACACTGcc  <  5:173426‑M2/143‑1 (MQ=255)                                                                                                                                            |                                                                                                                                               CTAAGCCCGAATAGTCACCACCTGAAGTGGATAGGAAGAGAACGCTATGCGCCTGGATGGCAACGCGGCAAGCCAGCGTCCACAGGTTC‑‑GGCACAGATCTCAAGAGCGGTGCAATACCTGTGGCG‑CTGGCTTGCCGGCGATGATTGGGCGCAGCGCCTGTCAGGCGAACTTGGCCCGGGCCGCGTGCAGCTTCTTGTAGCTGTCGATCAGGCGCAGGTGGCGATCAAGGCCTTCGAGCTTCATGCTGGTCGGGGTCAGGCCATGGAAGCGGACACTGCC  >  NC_002947/4114240‑4114518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.