New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4136298 =	43 (0.660)	4 (0.060)	4/256	NT	8.8%	coding (507/921 nt)	PP_3640	AraC family transcriptional regulator
	?	NC_002947	4136336 =	41 (0.650)					coding (545/921 nt)	PP_3640	AraC family transcriptional regulator

CATGGTCCAGGTTTGCCCCGGATGCTCGATCAATTGCTCAAGCAATCCGGCAAATGCCGGCTGGCGGGCGAGGGCGACCAGCCCGCCCAGCGATTGCCCTGCGTGCACCTGCTGGCGCAGCACGTACAGGAACAACAAGTGCGTCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4136445‑4136298 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTT  >  NC_002947/4136336‑4136461                                                                                                                                                                                                                                                                                    CATGGTCCAGGTTTGCCCCGGATGCTCGATCAATTGCTCAAGCAATCCGGCAAATGCCGGCTGGCGGGCGAGGGCGACCAGCCCGCCCAGCGATTGCCCTGCGTGCACCTGCTGGCGCAGCACGTACAGGAACAACAAGTGCGTCA                                                                                                                                  <  5:417593/146‑1                                                                                                           ACCTGCTGGCGCAGCACGTACAGGAACAACAAGTGCGTCAGCAGGTGCACGAAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCC                                                                  >  5:415365/1‑104                                                                                                           ACCTGCTGGCGCAGCACGTACAGGAACAACAAGTGCGTCAGCAGGTGCACGAAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCC                                                                  <  6:415365/104‑1                                                                                                             CTGCTGGCGCAGCACGTACAGGAACAACAAGTGCGTCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCAT                   >  7:255875/1‑149                                                                                                                               CAGGAACAACAAGTGCGTCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTT  <  8:255875/148‑1                                                                                                                                                                                                                                                                                    CATGGTCCAGGTTTGCCCCGGATGCTCGATCAATTGCTCAAGCAATCCGGCAAATGCCGGCTGGCGGGCGAGGGCGACCAGCCCGCCCAGCGATTGCCCTGCGTGCACCTGCTGGCGCAGCACGTACAGGAACAACAAGTGCGTCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4136445‑4136298 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTT  >  NC_002947/4136336‑4136461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.