New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4136298 =	43 (0.660)	4 (0.060)	4/256	NT	8.8%	coding (507/921 nt)	PP_3640	AraC family transcriptional regulator
	?	NC_002947	4136336 =	41 (0.650)					coding (545/921 nt)	PP_3640	AraC family transcriptional regulator

TCTTGTTACGCGCTGAAGATCCCAGCGGCAGCGCAGCGCGGGCGCTGTTCGGGCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGT  >  NC_002947/4136189‑4136479                                                                                                                                                    |                                                                                                                                                tCTTGTTACGCGCTGAAGATCCCAGCGGCAGCGCAGCGCGGGCGCTGTTCGGGCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCcagca                                                                                                                                                 <  5:197093/148‑1 (MQ=255) atggtccaggtttgccccggatgctcgatcaattgctcaagcaatccggcaaatgccggctggcgggcgagggcgaccagcccgcccagcgattgccctgcgtgcacctGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCcagcag                                                                                                                                                >  7:255875‑M1/110‑149 (MQ=255)       tACGCGCTGAAGATCCCAGCGGCAGCGCAGCGCGGGCGCTGTTCGGGCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCAc                                                                                                                                          >  3:42904/1‑149 (MQ=255)         cgcgCTGAAGATCCCAGCGGCAGCGCAGCGCGGGCGCTGTTCGGGCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGTCGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACg                                                                                                                                         <  5:104656/148‑1 (MQ=255)                aaGATCCCAGCGGCAGCGCAGCGCGGGCGGTGTTCGGGCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCaa                                                                                                                                 >  1:75845/1‑149 (MQ=255)                aaGATCCCAGCGGCAGCGCAGCGCGGGCGCTGTTCGGGCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCaa                                                                                                                                 >  5:344361/1‑149 (MQ=255)                      ccAGCGGCAGCGCAGCGCGGGCGCTGTTCGGGCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCt                                                                                                                            <  2:340436/148‑1 (MQ=255)                           ggCAGCGCGGCGCGGGCGCTGTTCGGGCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTgggcgg                                                                                                                      >  1:229833/1‑149 (MQ=255)                               gcgcagcgcGGGCGCTGTTCGGGCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTg                                                                                                                  >  5:69153/1‑149 (MQ=255)                                  cagcgcGGGCGCTGTTCGGGCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGtc                                                                                                               <  4:42904/149‑1 (MQ=255)                                  cagcgcGGGCGCTGTTCGGGCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGtc                                                                                                               <  3:70700/149‑1 (MQ=255)                                            gcTGTTCGGGCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGtcgccctcgccc                                                                                                     <  8:39893/149‑1 (MQ=255)                                                ggcaaatgccggctggcgggcgagggcgaccagcccgcccagcgattgcccttcgtgcacctGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGt                                                                                                                                              >  5:415365‑M1/63‑104 (MQ=255)                                                ggcaaatgccggctggcgggcgagggcgaccagcccgcccagcgattgcccttcgtgcacctGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGt                                                                                                                                              <  6:415365‑M1/42‑1 (MQ=255)                                                   gggCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGtcgccctcgcc                                                                                                      <  2:314259/141‑1 (MQ=255)                                                   gggCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGtcgccctcgcc                                                                                                      >  1:314259/1‑141 (MQ=255)                                                   gggCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGcc                                                                                              >  2:225735/1‑149 (MQ=255)                                                          tCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCAttt                                                                                       <  3:317569/149‑1 (MQ=255)                                                             tGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGcc                                                                                    >  4:65777/1‑149 (MQ=255)                                                              ggAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCg                                                                                   >  2:188285/1‑149 (MQ=255)                                                                       ccGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCtt                                                                           <  2:157537/148‑1 (MQ=255)                                                                             agaTGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAAt                                                                    <  2:229833/149‑1 (MQ=255)                                                                                tGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGa                                                                 <  2:75845/149‑1 (MQ=255)                                                                                  cTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATc                                                               <  6:344361/149‑1 (MQ=255)                                                                                   tGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATc                                                               >  4:161242/1‑148 (MQ=255)                                                                                   tGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATc                                                               >  6:48407/1‑148 (MQ=255)                                                                                    gggCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTg                                                                          <  5:314006/136‑1 (MQ=255)                                                                                    gggCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTg                                                                          >  6:314006/1‑136 (MQ=255)                                                                                         aTCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTGCGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATAGATCGAGCATc                                                        >  1:83886/1‑149 (MQ=255)                                                                                            acaGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCgg                                                     >  7:354856/1‑149 (MQ=255)                                                                                              aGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCgggg                                                   >  2:117106/1‑149 (MQ=255)                                                                                                aTGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGc                                                  >  6:381338/1‑148 (MQ=255)                                                                                                      cTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGtcgcc                                                                                                            >  1:218367/1‑84 (MQ=255)                                                                                                      cTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGtcgcc                                                                                                            <  2:218367/84‑1 (MQ=255)                                                                                                         gAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGa                                         <  2:85079/148‑1 (MQ=255)                                                                                                         gAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGAc                                        <  3:370322/149‑1 (MQ=255)                                                                                                          acctgctggcgcagcacgtacaggaacaacaagtgcgtcagcAGGTGCACGAAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGcc                                                                                    >  5:415365‑M2/43‑104 (MQ=255)                                                                                                          acctgctggcgcagcacgtacaggaacaacaagtgcgtcagcAGGTGCACGAAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGcc                                                                                    <  6:415365‑M2/62‑1 (MQ=255)                                                                                                          aaCGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGa                                                             <  6:191654/127‑1 (MQ=255)                                                                                                          aaCGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGa                                                             >  5:191654/1‑127 (MQ=255)                                                                                                            ctgctggcgcagcacgtacaggaacaacaagtgcgtcagcAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCAt                                     >  7:255875‑M2/41‑149 (MQ=255)                                                                                                                TGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATg                                    <  5:417593‑M1/146‑1 (MQ=255)                                                                                                                      aCTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATg                           >  2:155376/1‑149 (MQ=255)                                                                                                                       cTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATgg                          >  5:179170/1‑149 (MQ=255)                                                                                                                       cTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCACGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACAggg                          >  6:241753/1‑149 (MQ=255)                                                                                                                              caggaacaacaagtgcgtcagcAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCtt                    <  8:255875‑M2/126‑1 (MQ=255)                                                                                                                                 cTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCAc                >  7:341631/1‑149 (MQ=255)                                                                                                                                      cGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGt           >  1:72434/1‑149 (MQ=255)                                                                                                                                       gTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGtt          <  6:69153/149‑1 (MQ=255)                                                                                                                                       gTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGtt          >  8:350509/1‑149 (MQ=255)                                                                                                                                             cgcCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCa      <  7:350509/147‑1 (MQ=255)                                                                                                                                               ccAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGt  <  5:381338/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                TCTTGTTACGCGCTGAAGATCCCAGCGGCAGCGCAGCGCGGGCGCTGTTCGGGCTGATCCTGGAAGAATGCCGGCGAGATGCTGGGCCATCACAGATGCTACTGGAACGGCTGACGCACTTGTTGTTCCTGTACGTGCTGCGCCAGCAGGTGCACGCAGGGCAATCGCTGGGCGGGCTGGTCGCCCTCGCCCGCCAGCCGGCATTTGCCGGATTGCTTGAGCAATTGATCGAGCATCCGGGGCAAACCTGGACCATGGAGAACATGGCCGCTTGCACCGGGTTGTCACGGT  >  NC_002947/4136189‑4136479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.