New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4150041	20 (0.310)	11 (0.200)	9/228	NT	35.9%	intergenic (+40/‑357)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
	?	NC_002947	= 4150072	22 (0.390)					intergenic (+71/‑326)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein

GCCAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4149876‑4150041 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtaaacccgcTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACATTGGGAATAC  <  NC_002947/4150072‑4149925                                                                                                                                                                                                                                                                                                                            GCCAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCC                                                                                                                                                                       >  2:335754/1‑149      GGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGC                                                                                                                                                                  <  2:225025/149‑1       GACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCG                                                                                                                                                                 >  4:331907/1‑149        ACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGCCCAGTATTCCCAATGTGAAACTCTTGAGCTCGTCCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGG                                                                                                                                                                <  2:295858/149‑1        ACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATCTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGG                                                                                                                                                                <  1:335754/149‑1        ACCCGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGG                                                                                                                                                                <  3:15547/149‑1         CCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGG                                                                                                                                                               <  7:35/149‑1          CTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGG                                                                                                                                                               >  7:45072/1‑148          CTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGG                                                                                                                                                               >  8:220805/1‑148             CCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTA                                                                                                                                                             <  7:150932/147‑1              CGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAAC                                                                                                                                                          <  5:410035/149‑1                  GTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGC                                                                                                                                                      <  3:395521/149‑1                  GTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGC                                                                                                                                                      <  1:395656/149‑1                       AGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAACCGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTG                                                                                                                                                 >  3:320791/1‑149                        GAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTGC                                                                                                                                                >  4:249394/1‑149                               TATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGC                                                                                                                                         >  4:134908/1‑149                                        CACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCG                                                                                                                                                                   <  8:91931/114‑1                                                CAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTACCTCTTGTGCCGGCCTCTTCGCGGGTAAAACCGCTCCTGCGACGGGCTACGTCACCTTTGCAGG                                                                                                                        >  7:257820/1‑149                                                   TATTCCGAATGTGAAACGGTTGAGCTCGACCTTGGTGATGAATGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTACCTCTTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGC                                                                                                                     <  8:257820/149‑1                                                   TATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGC                                                                                                                     <  4:320791/149‑1                                                     TTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCG                                                                                                                    <  3:249394/148‑1                                                        CCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGG                                                                                                                   >  5:210665/1‑146                                                        CCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGG                                                                                                                   <  6:210665/146‑1                                                           ATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTAC                                                                                                             <  3:134908/149‑1                                                                               ACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCG                                                                                                                    <  7:318103/122‑1                                                                               ACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCG                                                                                                                    >  8:318103/1‑122                                                                                                                                                         GCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTT                <  6:174007/148‑1                                                                                                                                                          CGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCA              <  1:263459/149‑1                                                                                                                                                           GGGTAAACCCTCTCGTGCCACGGGATACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCAC             <  7:362396/149‑1                                                                                                                                                             GTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACAT           >  8:140556/1‑149                                                                                                                                                                AACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACATTGG        <  6:176715/149‑1                                                                                                                                                                 ACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGACACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCTTCACCAAGGTCGAGCTCAAGCGTTTCACATTGG        >  3:46072/1‑148                                                                                                                                                                      CTCGTGCGACGTGATACGCAACCTTTGCAGGCGGGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACATTGGGAATAC  <  7:54490/149‑1                                                                                                                                                                                                                                                                                                                            GCCAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4149876‑4150041 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtaaacccgcTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACATTGGGAATAC  <  NC_002947/4150072‑4149925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.