| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4150041 | 20 (0.310) | 11 (0.200) | 9/228 | NT | 35.9% | intergenic (+40/‑357) | PP_3654/PP_3655 | leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein |
| ? | NC_002947 | = 4150072 | 22 (0.390) | intergenic (+71/‑326) | PP_3654/PP_3655 | leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein | |||||
GTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAGGCCTTCAGCCAGCTGGCACTC > NC_002947/4149925‑4150214 | gTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCCCGCCTGCAAAGGTTGCGTATCACGTCGCACGAg < 7:54490‑M2/149‑2 (MQ=255) ccAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtt < 6:176715‑M2/149‑8 (MQ=255) ccAATGTGAAACGCTTGAGCTCGACCTTGGTGAAGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTGTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggt > 3:46072‑M2/1‑142 (MQ=255) aTGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttac > 8:140556‑M2/1‑139 (MQ=255) gtgAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTATCCCGTGGCACGAgagggtttaccc < 7:362396‑M2/149‑13 (MQ=255) tgAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttacccg < 1:263459‑M2/149‑14 (MQ=255) aaaCGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttacccgc < 6:174007‑M2/148‑15 (MQ=255) cTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCCCCTGCAAAGGTGACGTACCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAggccccc > 2:94979/1‑146 (MQ=255) atgaAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCttt < 5:176715/149‑1 (MQ=255) aggaagTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑c > 5:297037/1‑149 (MQ=255) gaagTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTg > 7:105177/1‑149 (MQ=255) gATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAATGGTGACGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAAcgc < 4:50286/149‑1 (MQ=255) aTCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAAcgcg < 7:235472/149‑1 (MQ=255) tCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACgcgc < 5:174007/149‑1 (MQ=255) tCCTCTTGTGCCGGCCCCTTCGCGGGTAAAACCGCGCCTGCAAAGGTTACGTAGCCCGTAGCAGGAGCGGG‑GTTAACCGCGAAGAGGCCGGCCCACGCCACCATTAAA‑CAGCCCAGAAAACCCGCCCCTCCCACCCACACAGCCCACCg > 8:27478/1‑149 (MQ=255) ggtctTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGt < 2:219570/147‑1 (MQ=255) tggtgCCGGCCCCTTCGGGGGAAACCCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGG‑TTAACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGa < 3:331907/145‑1 (MQ=255) ccGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCGGTCGCAGGAGGGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCgg < 1:94979/148‑1 (MQ=255) ccTTCGCGGGTAAACCCGCGCCTGCAAAGGTGAGGTAGCCCGTCACCGGAGCGGG‑GTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGGCCAGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCcccc > 4:381133/1‑149 (MQ=255) cgGCTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGACCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCccgcc > 8:63616/1‑149 (MQ=255) gTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtttcacat < 3:134908‑M2/149‑109 (MQ=255) ccGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttacccgcgaagaggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtttcacattgg > 5:210665‑M2/1‑35 (MQ=255) ccGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttacccgcgaagaggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtttcacattgg < 6:210665‑M2/146‑112 (MQ=255) ccGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTa > 2:198041/1‑149 (MQ=255) cgcgCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggt > 8:318103‑M2/1‑34 (MQ=255) cgcgCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggt < 7:318103‑M2/122‑89 (MQ=255) cgcgCCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttacccgcgaagaggccggcccaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtttcacattgggaa < 3:249394‑M2/148‑115 (MQ=255) gcgcCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtttcacattgggaata < 4:320791‑M2/149‑117 (MQ=255) gcgcCTGCAAAGGTGACGTAGCCCGTCGCAGGAgcgggtttacccgcgaagaggccggcacaagaggtaacagctacatggggagcaaccgatcctggatcacttcattcatcaccaaggtcgagctcaaccgtttcacattcggaata < 8:257820‑M2/149‑117 (MQ=255) ccTGCAAAGGTGACGTAGCCCGTCGCAGGAgcggttttacccgcgaagaggccggcacaagaggtaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtttcacattgggaatactg > 7:257820‑M2/1‑30 (MQ=255) cAAAGGTGACGTAGCCCGTCGCAGGAGCGGGATTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACCCCCACAACGCACCAACCCCGCCCCCCGGGAACCGGTTGCCACCCCCGCCCCCCCGCTACCCCAAgg > 1:42652/1‑149 (MQ=255) gTGACGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAGGCCTTca < 6:297037/149‑1 (MQ=255) gTGACGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAGGCCTTca < 8:105177/149‑1 (MQ=255) gTGACGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGACACCCCCGCCGCCCCTCTACCCCAACGCCATca > 6:250597/1‑149 (MQ=255) gTGACGTAGCCCGTCGCAGGAGAGGG‑TTTACCCGAGAAGACGCCGGCCCAGGCAACATTTCAT‑CTGCCATGAAAAACCGCACATCGCACCAACCCAGCCCACCGAAAACCGGTTCCCACCCCAGACGCCCCACAACAACAAGGccataa > 5:416191/1‑145 (MQ=255) gACGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAGGCCTTcagc > 7:383925/1‑149 (MQ=255) aCGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAGGCCTTcagc < 5:250597/148‑1 (MQ=255) gCCCGTCGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtttcacattgggaatactggtcaggtgctcgtcata > 4:134908‑M2/1‑13 (MQ=255) gCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAGGCCTTCAGCCAGCTg < 2:42652/149‑1 (MQ=255) gTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCAGGTTGCCACCCCCGCCCCCCCGCTACCCCAAGGCCTTCAGCCAGCTGGCAc > 6:320058/1‑149 (MQ=255) gCAGGAgcgggtttacccgcgaagaggccggcccaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtttcacattgggaatactggtcaggtgctcgtcatacagcttc > 4:249394‑M2/1‑6 (MQ=255) cAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcggttcacattgggaatactggtcaggtgctcgtcatacagcttct > 3:320791‑M2/1‑5 (MQ=255) cAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCccgc > 6:372069/1‑109 (MQ=255) cAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCccgc < 7:303953/109‑1 (MQ=255) cAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCccgc < 5:372069/109‑1 (MQ=255) cAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCccgc > 8:303953/1‑109 (MQ=255) | GTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGTCGCAGGAGCGGG‑TTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCAT‑CTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAGGCCTTCAGCCAGCTGGCACTC > NC_002947/4149925‑4150214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |