New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4168379	55 (0.850)	3 (0.050)	3/250	NT	5.6%	coding (1514/2256 nt)	katG	catalase‑peroxidase
	?	NC_002947	= 4168417	50 (0.810)					coding (1476/2256 nt)	katG	catalase‑peroxidase

ACGATCAGGTCAGCCAGGGAAACCTTCTTGCCGCTGCTGTTGAACTCGCCCTGGATCTTCTCCAATGCCGCCAGCACCTTGTCCACGCCCTGGTTTGCAGCCCAGTCCTTCTGTGGCGCCAAGCGCAAACGTGCGCCGTTGGCACCACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4168229‑4168379 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccgcCTGGGCATCCGCGTCGACCTTCCGCGGCTCCGACAAGCGCGGTGGTGCCAACGGCGCACGTTTGCGCTTGGCGCCACAGAAGGACTGGGCTGCAAACCAGGGCGTGGACAAGGTGCTGGCGGCATTGGAGAAGATCCAGGGCGAGT  <  NC_002947/4168417‑4168272                                                                                                                                                                                                                                                                                                           ACGATCAGGTCAGCCAGGGAAACCTTCTTGCCGCTGCTGTTGAACTCGCCCTGGATCTTCTCCAATGCCGCCAGCACCTTGTCCACGCCCTGGTTTGCAGCCCAGTCCTTCTGTGGCGCCAAGCGCAAACGTGCGCCGTTGGCACCACC                                                                                                                                                      <  2:143758/149‑1                                                GCCCTGGATCTTCTCCAATGCCGCCAGCACCTTGTCCACGCCCTGGTTTGCAGCCCAGTCCTTCTGTGGCGCCAAGCGCAAACGTGCGCCGTTGGCACCACCGCCTGGGCATCCGCGTCGACCTTCCGCGGCTCCGACAAGCGCGGTG                                                                                                        <  7:48459/148‑1                                                                      GCCAGCACCTTGTCCACGCCCTGGTTTGCAGCCCAGTCCTTCTGTGGCGCCAAGCGCAAACGTGCGCCGTTGGCACCACCGCCTGGGCATCCGCGTCGACCTTCCGCGGCTCCGACAAGCGCGGTGGTG                                                                                                     <  7:199766/129‑1                                                                      GCCAGCACCTTGTCCACGCCCTGGTTTGCAGCCCAGTCCTTCTGTGGCGCCAAGCGCAAACGTGCGCCGTTGGCACCACCGCCTGGGCATCCGCGTCGACCTTCCGCGGCTCCGACAAGCGCGGTGGTG                                                                                                     >  8:199766/1‑129                                                                                                                                                  CACCGCCTGGGCATCCGCGTCGACCTTCCGCGGCTCCGACAAGCGCGGTGGTGCCAACGGCGCACGTTTGCGCTTGGCGCCACAGAAGGACTGGGCTGCAAACCAGGGCGTGGACAAGGTGCTGGCGGCATTGGAGAAGATCCAGGG       <  5:153329/147‑1                                                                                                                                                  CACCGCCTGGGCATCCGCGTCGACCTTCCGCGGCTCCGACAAGCGCGGTGGTGCCAACGGCGCACGTTTGCGCTTGGCGCCACAGAAGGACTGGGCTGCAAACCAGGGCGTGGACAAGGTGCTGGCGGCATTGGAGAAGATCCAGG        <  1:143614/146‑1                                                                                                                                                   ACCGCCTGGGCATCCGCGTCGACCTTCCGCGGCTCCGACAAGCGCGGTGGTGCCAACGGCGCACGTTTGCGCTTGGCGCCACAGAAGGACTGGGCTGCAAACCAGGGCGTGGACAAGGTGCTGGCGGCATTGGAGAAGATCCAGGGCGA    <  4:54280/149‑1                                                                                                                                                    CCGCCTGGGCATCCGCGTCGACCTTCCGCGGCTCCGACAAGCGCGGTGGTGCCAACGGCGCACGTTTGCGCTTGGCGCCACAGAAGGACTGGGCTGCAAACCAGGGCGTGGACAAGGTGCTGGCTGCATTGGAGAAGATCCAGGGCGAG   <  6:386821/149‑1                                                                                                                                                     CGCCTGGGCATCCGCGTCGACCTTCCGCGGCTCCGACAAGCGCGGTGGTGCCAACGGCGCACGTTTGCGCTTGGCGCCACAGAAGGACTGGGCTGCAAACCAGGGCGTGGACAAGGTGCTGGCGGCATTGGAGAAGATCCAGGGCGAGT  <  1:170718/149‑1                                                                                                                                                                                                                                                                                                           ACGATCAGGTCAGCCAGGGAAACCTTCTTGCCGCTGCTGTTGAACTCGCCCTGGATCTTCTCCAATGCCGCCAGCACCTTGTCCACGCCCTGGTTTGCAGCCCAGTCCTTCTGTGGCGCCAAGCGCAAACGTGCGCCGTTGGCACCACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4168229‑4168379 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccgcCTGGGCATCCGCGTCGACCTTCCGCGGCTCCGACAAGCGCGGTGGTGCCAACGGCGCACGTTTGCGCTTGGCGCCACAGAAGGACTGGGCTGCAAACCAGGGCGTGGACAAGGTGCTGGCGGCATTGGAGAAGATCCAGGGCGAGT  <  NC_002947/4168417‑4168272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.