New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4191542 =	53 (0.810)	4 (0.060)	4/250	NT	7.8%	intergenic (‑874/‑283)	PP_5612/PP_5613	hypothetical protein/hypothetical protein
	?	NC_002947	4191584 =	44 (0.710)					intergenic (‑916/‑241)	PP_5612/PP_5613	hypothetical protein/hypothetical protein

TGAGTTGTCAGGTGCTTAGGTCGTGGAGGCTTGTGAAATCCTCGTGTGCGAAGAACGCTGAGTTGACCGTAGCCAGCTCTCAGCTAGAGGCTTTGTTGGCTCTCAAATGAGGCGGCTTCACTTGGCAGCCAGGAAGCCTTCACGCCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4191690‑4191542 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctcaTTTGAGAGCCAACAAAGCCTCTAGCTGAGAGCTGGCTACGGTCAACTCAGCGTTCTTCGCACACGAGGATTTCACAAGCCTCCACGACCTAAGCACCTGACAACTCAGGCAAAAAACTGATAACGGTATGCCCGCGCTATACTGAT  >  NC_002947/4191584‑4191729                                                                                                                                                                                                                                                                                                         TGAGTTGTCAAGTGCTTAGGTCGTGGAGGCTTGTGAAATCCTCGTGTGCGAAGAACGCTGAGTTGACCGTAGCCAGCTCTCAGCTAGAGGCTTTGTTGGCTCTCAAATGAGGCGGCTTCACTTGGCAGCCAGGAAGCCTTCACGCCT                                                                                                                                                      >  2:188812/1‑147                                                                                                    CTCTCAAATGAGGCGGCTTCACTTGGCAGCCAGGAAGCCTTCACGCCTCATTTGAGAGCCAACAAAGCCTCTAGCTGAGAGCTGGCTACGGTCAACTCAGCGTTCTTCGCACACGAGGATTTCACAA                                                                       >  5:306615/1‑127                                                                                                    CTCTCAAATGAGGCGGCTTCACTTGGCAGCCAGGAAGCCTTCACGCCTCATTTGAGAGCCAACAAAGCCTCTAGCTGAGAGCTGGCTACGGTCAACTCAGCGTTCTTCGCACACGAGGATTTCACAA                                                                       <  6:306615/127‑1                                                                                                       TCAAATGAGGCGGCTTCACTTGGCAGCCAGGAAGCCTTCACGCCTCATTTGAGAGCCAACAAAGCCTCTAGCTGAGAGCTGGCTACGGTCAACTCAGCGTTCTTCGCACACGAGGATTTCACAAGCCTCCACGACCTAAGCAC                                                    <  2:329400/143‑1                                                                                                       TCAAATGAGGCGGCTTCACTTGGCAGCCAGGAAGCCTTCACGCCTCATTTGAGAGCCAACAAAGCCTCAAGCTGAGAGCTGGCTACGGTCAACTCAGCGTTCTTCGCACACGAGGATTTCACAAGCCTCCACGACCTAAGCAC                                                    >  1:329400/1‑143                                                                                                                                               CGCCTCATTTGAGAGCCAACAAAGCCTCTAGCTGAGAGCTGGCTACGGTCAACTCAGCGTTCTTCGCACACGAGGATTTCACAAGCCTCCACGACCTAAGCACCTGACAACTCAGGCAAAAAACTGATAACGGTATGCCCGCGCTATAC      <  1:346795/149‑1                                                                                                                                               CGCCTCATTTGAGAGCCAACAAAGCCTCTAGCTGAGAGCTGGCTACGGTCAACTCAGCGTTCATCGCACACGAGGATTTCACAAGCCTCCACGACCTAAGCACCTGACAACTCAGGCAAAAAACTGATAACGGTATGCCCGCGCTATAC      <  2:157644/149‑1                                                                                                                                                     ATTTGAGAGCCAACAAAGCCTCTAGCTGAGAGCTGGCTACGGTCAACTCAGCGTTCTTCGCACACGAGGATTTCACAAGCCTCCACGACCTAAGCACCTGACAACTCAGGCAAAAAACTGATAACGGTATGCCCGCGCTATACTGAT  <  7:367491/147‑1                                                                                                                                                                                                                                                                                                         TGAGTTGTCAGGTGCTTAGGTCGTGGAGGCTTGTGAAATCCTCGTGTGCGAAGAACGCTGAGTTGACCGTAGCCAGCTCTCAGCTAGAGGCTTTGTTGGCTCTCAAATGAGGCGGCTTCACTTGGCAGCCAGGAAGCCTTCACGCCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4191690‑4191542 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctcaTTTGAGAGCCAACAAAGCCTCTAGCTGAGAGCTGGCTACGGTCAACTCAGCGTTCTTCGCACACGAGGATTTCACAAGCCTCCACGACCTAAGCACCTGACAACTCAGGCAAAAAACTGATAACGGTATGCCCGCGCTATACTGAT  >  NC_002947/4191584‑4191729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.