New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 442437342 (0.650)6 (0.100) 5/250 NT 11.7% coding (286/393 nt) PP_3916 hypothetical protein
?NC_002947 = 4424397 51 (0.830)coding (310/393 nt) PP_3916 hypothetical protein

ACCAGGGCCAGGCCATCGAGCACACCAAGCGCTTCAACCCGTGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4424224‑4424373
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacggcaGATCAGCGCCCTGGGCGACGTCCTTGCCGTTATCGGTTATCCAGGCTGCCCAGTAGTCCCACTCTGGCTGCGGGCAGTGCAGGCTGACGTTGTGCTTCTGCATGATCGGCCCGCCAACCGCCCAGTCTTCCCACGGGTTGAAGCGC  <  NC_002947/4424397‑4424252
                                                                                                                                                                                                                                                                                                        
ACCAGGGCCAGGCCATCGAGCACACCAAGCGCTTCAACCCGTGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGG                                                                                                                                                      >  2:348419/1‑148
           GCCATCGAGCACACCAAGCGCTTCAACCCGTGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAGATCAGCGCC                                                                                                                                          >  3:182886/1‑149
                                   AACCCGTGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAGATCAGCGCCCTGGGCGACGTCCTTGCCGTTATC                                                                                                                  <  3:84115/149‑1
                                   AACCCGTGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGGGCGACTACTGGGCAGCCTGGATAACCGATAACGGCAGATCAGCGCCCTGGGCGACGTCCTTGCCGTTATC                                                                                                                  <  3:307117/149‑1
                                    ACCCGTGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAGATCAGCGCCCTGGGCGACGTCCTTGCCGTTATCG                                                                                                                 <  4:182886/149‑1
                                      CCGTGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAGATCAGCGCCCTGGGCGACGTCCTTGCCGTTAT                                                                                                                   <  3:314463/145‑1
                                      CCGTGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAGATCAGCGCCCTGGGCGACGTCCTTGCCGTTAT                                                                                                                   >  4:314463/1‑145
                                                                                                                                               AACGGCAGATCAGCGCCCTTGGCGACGTCCTTGCCGTTATCGGTTATCCAGGCTGCCCAGTAGTCCCACTCTGGCTGCGGGCAGTGCATGCTGACGTTGTTCTTCTGCATGATCGGCCCGCCAACCGCCCAGTCTTCCCACGGGTTGAA      <  3:153498/149‑1
                                                                                                                                                 CGGCAGATCAGCGCCCTGGGCGACGTCCTTGCCGTTATCGGTTATCCAGGCTGCCCAGTAGTCCCACTCTGGCTGCGGGCAGTGCAGGCTGACGTTGTGCTTCT                                                 <  3:397273/104‑1
                                                                                                                                                 CGGCAGATCAGCGCCCTGGGCGACGTCCTTGCCGTTATCGGTTATCCAGGCTGCCCAGTAGTCCCACTCTGGCTGCGGGCAGTGCAGGCTGACGTTGTGCTTCT                                                 >  4:397273/1‑104
                                                                                                                                                   GCAGATCAGCGCCCTGGGCGACGTCCTTGCCGTTATCGGTTATCCAGGCTGCCCAGTAGTCCCACTCTGGCTGCGGGCAGTGCAGGCTGACGTTGTGCTTCTGCATGATCGGCCCGCCAACCGCCCAGTCTTCCCACGGGTTGAAGCGC  <  7:6473/149‑1
                                                                                                                                                                                                                                                                                                        
ACCAGGGCCAGGCCATCGAGCACACCAAGCGCTTCAACCCGTGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4424224‑4424373
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacggcaGATCAGCGCCCTGGGCGACGTCCTTGCCGTTATCGGTTATCCAGGCTGCCCAGTAGTCCCACTCTGGCTGCGGGCAGTGCAGGCTGACGTTGTGCTTCTGCATGATCGGCCCGCCAACCGCCCAGTCTTCCCACGGGTTGAAGCGC  <  NC_002947/4424397‑4424252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.