New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4424373 | 42 (0.650) | 6 (0.100) | 5/250 | NT | 11.7% | coding (286/393 nt) | PP_3916 | hypothetical protein |
? | NC_002947 | = 4424397 | 51 (0.830) | coding (310/393 nt) | PP_3916 | hypothetical protein |
CAAGCGCTTCAACCCGTGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTCGCCTACATGGCCTACCTGATCTACAGGGGGCTTCTCGGTGAG > NC_002947/4424249‑4424539 | cAAGCGCTTCAACCCGTGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATc < 5:314976/149‑1 (MQ=255) gcgcTTCAACCCGTGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCtgc < 7:6473‑M2/149‑4 (MQ=255) ttCAACCCGTGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGAACAACGTCAGCATGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCAAGGGCGCTGATCtgccgtt < 3:153498‑M2/149‑8 (MQ=255) aCCCGTGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCcg < 3:389795/149‑1 (MQ=255) tGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCggcggc < 8:83833/149‑1 (MQ=255) gAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTg > 3:286097/1‑149 (MQ=255) gAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTg > 4:209817/1‑149 (MQ=255) gAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTg < 3:153802/149‑1 (MQ=255) aaGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGc < 5:68258/149‑1 (MQ=255) aCTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCCGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTCCCGTTGCCGGCGGCGTGCCgg > 3:36563/1‑149 (MQ=255) aCTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCgg > 7:183182/1‑149 (MQ=255) gtcGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGcc < 6:217781/146‑1 (MQ=255) ggCGGGCCGATCATGCAGAATCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGTGACTACTGGGCAGCCTGGATAACCTATAACGGCAAGGACGTCTCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATATTCg < 4:153498/148‑1 (MQ=255) aTCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCt > 3:350325/1‑149 (MQ=255) aTGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCg < 8:320187/148‑1 (MQ=255) aGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCtgccg < 3:397273‑M2/104‑6 (MQ=255) aGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCtgccg > 4:397273‑M2/1‑99 (MQ=255) gAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATa < 2:148929/149‑1 (MQ=255) acaACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCcca < 1:281329/130‑1 (MQ=255) acaACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCcca > 2:281329/1‑130 (MQ=255) caACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTc > 5:172934/1‑148 (MQ=255) aGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGc < 6:172934/148‑1 (MQ=255) ccTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCg < 1:348419/148‑1 (MQ=255) ccTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCg > 8:14540/1‑148 (MQ=255) cACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAg < 3:209817/147‑1 (MQ=255) cACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCAAAGGa < 7:231663/149‑1 (MQ=255) ccGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGAt < 7:14540/149‑1 (MQ=255) ccGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGCAGCTGAt > 2:215921/1‑149 (MQ=255) cGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATg > 1:172072/1‑149 (MQ=255) cAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCgg < 6:296659/112‑1 (MQ=255) cAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCgg > 5:296659/1‑112 (MQ=255) ctGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTcc > 4:139748/1‑149 (MQ=255) tcAGCCTTGATAACGTCTAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTTCAGGCGGCGTGCAGGGCCATAGTCGCCCTCCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTTATCCTTCCCCTc < 8:344717/148‑1 (MQ=255) gCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTc < 4:286097/149‑1 (MQ=255) gCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTc < 8:6473/149‑1 (MQ=255) cAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAgg > 4:180138/1‑108 (MQ=255) cAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAgg < 3:180138/108‑1 (MQ=255) gCCTGGATAACCGATAACGGCAAGGACGCCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATc > 6:240476/1‑137 (MQ=255) ccTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTCGcc > 7:329425/1‑148 (MQ=255) gATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAg < 2:378882/100‑1 (MQ=255) gATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAg > 1:378882/1‑100 (MQ=255) ccGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTCGCCTACATGGcc > 5:299561/1‑148 (MQ=255) cGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCtgccgttatcggttatccaggctgcccagtagtcccactctggctgcgggcagtgcaggctgacgttgtgcttctgcatgatcggcccgccaaccgcccagtcttcccacgggt < 4:182886‑M2/149‑115 (MQ=255) cGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCGATGACCGTGATCCTTCCCCTCGCCTACATGGCCTa > 7:376914/1‑149 (MQ=255) gATAACGGCAAGGACGTCGCCCAGGGCGCTGATCtgccgttatcggttatccaggctgcccagtagtcgccctctggctgcgggcagtgcaggctgacgttgtgcttctgcatgatcggcccgccaaccgcccagtcttcccacgggtt < 3:307117‑M2/149‑116 (MQ=255) gATAACGGCAAGGACGTCGCCCAGGGCGCTGATCtgccgttatcggttatccaggctgcccagtagtcccactctggctgcgggcagtgcaggctgacgttgtgcttctgcatgatcggcccgccaaccgcccagtcttcccacgggtt < 3:84115‑M2/149‑116 (MQ=255) aTAACGGCAAGGACGTCGCCCAGGGCGCTGATCtgccgttatcggttatccaggctgcccagtagtcccactctggctgcgggcagtgcaggctgacgttgtgcttctgcatgatcggcccgccaaccgcccagtcttcccacgg < 3:314463‑M2/145‑113 (MQ=255) aTAACGGCAAGGACGTCGCCCAGGGCGCTGATCtgccgttatcggttatccaggctgcccagtagtcccactctggctgcgggcagtgcaggctgacgttgtgcttctgcatgatcggcccgccaaccgcccagtcttcccacgg > 4:314463‑M2/1‑33 (MQ=255) gCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTCGCCTACATGGCCTACCTGATc > 3:365567/1‑148 (MQ=255) cAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCCTGACCGAGATCCTTCCCCTCGCCTACATGGCCTACCTGATCTa > 5:39603/1‑149 (MQ=255) aaGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTCGCCTACATGGCCTACCTGATCTAc < 6:222470/149‑1 (MQ=255) aGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTCGCCTACATGGCCTACCTGATCTACa < 2:379811/149‑1 (MQ=255) ggACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTCGCCTACATGGCCTACCTGATCTACAg > 5:361219/1‑149 (MQ=255) gACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTCGCCTACATGGCCTACCTGATCTACAgg > 2:87330/1‑149 (MQ=255) gACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTCGCCTACATGGCCTACCTGATCTACAgg < 8:329425/149‑1 (MQ=255) gACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTCGCCTACATGGCCTACCTGATCTACAgg < 4:365567/149‑1 (MQ=255) cGTGGCCCAGGGCGGTTTTCTGGCCTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGTTGGCATGACCGTGATCCTTCCCCTCGCCTACATGGCCTACCTGATCTACAgggg < 6:39603/149‑1 (MQ=255) cGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTCGCCTACATGGCCTACCTGATCTACAgggg < 2:172072/149‑1 (MQ=255) cGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTccc > 7:44156/1‑114 (MQ=255) cGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTccc < 8:44156/114‑1 (MQ=255) aGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTCGCCTACATGGCCTACCTGATCTACAGGGGGCTTCTCg < 2:79586/149‑1 (MQ=255) ggCGCTGATCtgccgttatcggttatccaggctgcccagtagtcccactctggctgcgggcagtgcaggctgacgttgtgcttctgcatgatcggcccgccaaccgcccagtcttcccacgggttgaagcgcttggtgtgctcgatggc > 3:182886‑M2/1‑10 (MQ=255) gcTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTCGCCTACATGGCCTACCTGATCTACAGGGGGCTTCTCGGTgag < 6:361219/149‑1 (MQ=255) | CAAGCGCTTCAACCCGTGGGAAGACTGGGCGGTTGGCGGGCCGATCATGCAGAAGCACAACGTCAGCCTGCACTGCCCGCAGCCAGAGTGGGACTACTGGGCAGCCTGGATAACCGATAACGGCAAGGACGTCGCCCAGGGCGCTGATCTGCCGTTGCCGGCGGCGTGCCGGGCCATAGTCGCCCACCAGCTCGGCGATACCGTCCAGGTGCCGAAGGAGCTGATGCCATGACCGTGATCCTTCCCCTCGCCTACATGGCCTACCTGATCTACAGGGGGCTTCTCGGTGAG > NC_002947/4424249‑4424539 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |