| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4603515 = | 54 (0.830) | 4 (0.060) | 4/250 | NT | 7.5% | intergenic (+846/‑656) | PP_4074/PP_4076 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 4603585 = | 47 (0.760) | intergenic (+916/‑586) | PP_4074/PP_4076 | hypothetical protein/hypothetical protein | |||||
GGCCTGCAGCTGGCCCAGCGATTCGTACAGATGCACCGGCAGGCCTTCGACGGCACCTCCCGATTGCGGGCCGATGATGTTGGGGCACCAGCGGTAGCGGGCAAAGCTGTCGTTAATGCAGCTGGCCAACAGGAAGGCTGAGCTGCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4603664‑4603515‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccccaACATCATCGGCCCGCAATCGGGAGGTGCCGTCGAAGGCCTGCCGGTGCATCTGTACGAATCGCTGGGCCAGCTGCAGGCCAAGATCCCTACCGAGGTACTGATTTCCGACCGCAAGGAGTTCGAGCTGGCCGAAGAGGGCTTTATC > NC_002947/4603585‑4603730 GGCCTGCTGCTGGCCCAGCGTTTCGTACAGATGCACCGGCAGGCCTTCTACGGCACCTCCCGATTGCGGGCCGTTGATGTTGGGGCACCAGCGGTAGCGGGCAAAGCTGTCGTTAATGCAGCTGGCCAACAGGAAGGCTGAGCTGCCC < 4:291769/148‑1GGCCTGCAGCTGGCCCAGCGATTCGTACAGATGCACCGGCAGGCCTTCGACGGCACCTCCCGATTGCGGGCCGATGATGTTGGGGCACCAGCGGTAGCGGGCGAAGCTGTCGTTAATGCAGCTGGCCAACAGGAAGGCTGAGCTGCCC > 5:317973/1‑148 CCTGCAGCTGGCCCAGCGATTCGTACAGATGCACCGGCAGGCCTTCGACGGCACCTCCCGATTGCGGGCCGATGATGTTGGGGCACCAGCGGTAGCGGGCAAAGCTGTCGTTAATGCAGCTGGCCAACAGGAAGGCTGAGCTGCCCCA > 4:402441/1‑148 ATGTTGGGGCACCAGCGGTAGCGGGCAAAGCTGTCGTTAATGCAGCTGGCCAACAGGAAGGCTGAGCTGCCCCAACATCATCGGACAGCAATCGGGAGGTGCCGTCGAAGGCCTGCCGCTGCATATGTACGAATCGCTGGGCCAGATG > 3:263179/1‑148 TTGGGGCACCAGCGGTAGCGGGCAAAGCTGTCGTTAATGCAGCTGGCCAACAGGAAGGCTGCGCTGCCCCAACATCATCGGCCCGCAATCGGGTGGTGCCGTCGAAGGCCTGCCGGTGCATCTGTACGAATCGCTGGGCCAGCTGCAGG > 1:247676/1‑149 AGCTGTCGTTAATGCAGCTGGCCAACAGGTAGGCTGAGCTGCCCCAAGATCATCGGCCCGCAATCGGGAGGTGCCGTCGAAGGCCTGCCGGTGCATCTGTACGAATCGCTGGGCCAGCTGCAGGCCAAGATCCCTACCGAGGTACTGAT < 2:247676/149‑1 AGCTGGCCAACAGGAAGGCTGAGCTTCCCCAACATCATCGGCCCGCAATCGGGAGGTGCCGTCGAAGGCCTGCCGTTGCATCTGTACGAATCGCTGGGCCAGCTGCAGGCCAAGATCCCTACCGAGGTACTGATTTCCGACCGCAAGGA < 4:263179/149‑1 CCCAACATCATCGGCCCGCAATCGGGAGGTGCCGTCGAAGGCCTGCCGGTGCATCTGTACGAATCGCTGGGCCAGCTGCAGGCCAAGATCCCTACCGAGGTACTGATTTCCGACCGCAAGGAGTTCGAGCTGGCCGAAGAGGGCTTTAT > 4:371575/1‑149 CCCAACATCATCGGCCCGCAATCGGGAGGTGCCGTCGAAGGCCTGCCGGTGCATCTGTACGAATCGCTGGGCCAGCTGCAGGCCAAGATCCCTACCGAGGTACTGATTTCCGACCGCAAGGAGTTCGAGCTGGCCGAAGAGGGCTTTAT > 6:235617/1‑149 CCCAACATCATCGGCCCGCAATCGGGAGGTGCCGTCGAAGGCCTGCCGGTGCATCTGTACGAATCGCTGGGCCAGCTGCAGGCCAAGATCCCTACCGAGGTACTGATTTCCGACCGCAAGGAGTTCGAGCTGGCCGAAGAGGGCTTTAT > 6:412446/1‑149 CCAACATCATCGGCCCGCAATCGGGAGGTGCCGTCGAAGGCCTGCCGGTGCATCTGTACGAATCGCTGGGCCAGCTGCAGGCCAAGATCCCTACCGAGGTACTGATTTCCGACCGCAAGGAGTTCGAGCTGGCCGAAGAGGGCTTTATC > 4:403169/1‑149 GGCCTGCAGCTGGCCCAGCGATTCGTACAGATGCACCGGCAGGCCTTCGACGGCACCTCCCGATTGCGGGCCGATGATGTTGGGGCACCAGCGGTAGCGGGCAAAGCTGTCGTTAATGCAGCTGGCCAACAGGAAGGCTGAGCTGCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4603664‑4603515‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccccaACATCATCGGCCCGCAATCGGGAGGTGCCGTCGAAGGCCTGCCGGTGCATCTGTACGAATCGCTGGGCCAGCTGCAGGCCAAGATCCCTACCGAGGTACTGATTTCCGACCGCAAGGAGTTCGAGCTGGCCGAAGAGGGCTTTATC > NC_002947/4603585‑4603730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |