| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5084615 = | 54 (0.830) | 3 (0.050) | 3/252 | NT | 5.6% | intergenic (‑350/+35) | alaS/astE | alanine‑‑tRNA ligase/succinylglutamate desuccinylase |
| ? | NC_002947 | 5084650 = | 50 (0.810) | coding (1008/1008 nt) | astE | succinylglutamate desuccinylase | |||||
GGTGGTCGAGGAGGAGGGTGCGCGCATCATCTTCCCCAACCCCAAGGTCAAGAACGGCTTGCGCGCCGGCATTCTGATCGTGCCGGATTCGGGGCAGCGCCTGGGGTGAGAGCGGTGTCGCCTGTTTCGTGGGTG‑ACCCCGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5084758‑5084615‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcTCACCCCAGGCGCTGCCCCGAATCCGGCACGATCAGAATGCCGGCGCGCAAGCCGTTCTTGACCTTGGGGTTGGGGAAGATGATGCGCGCACCCTCCTCCTCGACCACCCAGCGCATCTCGGCCAGGTCTTCAGCCAGCAGGTAA > NC_002947/5084650‑5084794 GGTGGTCGAGGAGGAGGGTGCGCGCATCATCTTCCCCAACCCCAAGGTCAAGAACGGCTTGCGCGCCGGCATTCTGATCGTGCCGGATTCGGGGCAGCGCCTGGGGTGAGAGCGGTGTAGCCAGTTTTGTGGGTGTACCCCcaacaac > 4:356687/1‑141 GGTGAGAGCGGTGTCGCCTGTTTCGTGGATG‑ACCCCGCTCTCACCCCAGGCGCTGCCCCGAATCCGGCACGATCAGAATGCCGGCGCGCAAGCCGTTCTTGACCTTGGGGTTGGGGAAGATGATGCGCGCACCCTCCTCCTCGACCACC > 1:229594/1‑149 GTGAGAGCGGTGTCGCCTGTTTCGTGGGTG‑ACCCCGCTCTCACCCCAGGCGCTGCCCCGAATCCGGCACGATCAGAATGCCGGCGCGCAAGCCGTTCTTGACC < 5:311658/103‑1 GTGAGAGCGGTGTCGCCTGTTTCGTGGGTG‑ACCCCGCTCTCACCCCAGGCGCTGCCCCGAATCCGGCACGATCAGAATGCCGGCGCGCAAGCCGTTCTTGACC > 6:311658/1‑103 gCCGCTCTCACCCCAGGCGCTGCCCCGAATCCGGCACGATCAGAATGCCGGCGCGCAAGCCGTTCTTGACCTTGGGGTTGGGGAAGATGATGCGCGCACCCTCCTCCTCGACCACCCAGCGCATCTCGGCCAGGTCTTCAGCCAGCAG < 3:255833/147‑1 CGCTCTCACCCCAGGCGCTGCCCCGAATCCGGCACGATCAGAATGCCGGCGCGCAAGCCGTTCTTGACCTTGGGGTTGGGGAAGATGATGCGCGCACCCTCCTCCTCGACCACCCAGCGCATCTCGGCCAGGTCTTCAGCCAGCAG > 4:255833/1‑146 GCTCTCACCCCAGGCGCTGCCCCGAATCCGGCACGATCAGAATGCCGGCGCGCAAGCCGTTCTTGACCTTGGGGTTGTGGAAGATGATGCGCGCACCCTCCTCCTCGACCACCCAGCGCATCTCGGCCAGGTCTTCAGCCAGCAGGTAA < 5:285840/149‑1 TCTCACCCCAGGCGCTGCCCCGAATCCGGCACGATCAGAATGCCGGCGCGCAAGCCGTTCTTGACCTTGGGGTTGGGGAAGATGATGCGCGCACCCTCCTCCTCGACCACCCAGCGCATCTCGGCCAGGTCTTCAGCCAGCAG > 1:256875/1‑143 TCTCACCCCAGGCGCTGCCCCGAATCCGGCACGATCAGAATGCCGGCGCGCAAGCCGTTCTTGACCTTGGGGTTGGGGAAGATGATGCGCGCACCCTCCTCCTCGACCACCCAGCGCATCTCGGCCAGGTCTTCAGCCAGCAG < 2:256875/143‑1 CTCACCCCAGGCGCTGCCCCGAATCCGGCACGATCAGAATGCCGGCGCGCAAGCCGTTCTTGACCTTGGGGTTGGGGAAGATGATGCGCGCACCCTCCTCCTCGACCACCCAGCGCATCTC < 7:28734/121‑1 CTCACCCCAGGCGCTGCCCCGAATCCGGCACGATCAGAATGCCGGCGCGCAAGCCGTTCTTGACCTTGGGGTTGGGGAAGATGATGCGCGCACCCTCCTCCTCGACCACCCAGCGCATCTC > 8:28734/1‑121 GGTGGTCGAGGAGGAGGGTGCGCGCATCATCTTCCCCAACCCCAAGGTCAAGAACGGCTTGCGCGCCGGCATTCTGATCGTGCCGGATTCGGGGCAGCGCCTGGGGTGAGAGCGGTGTCGCCTGTTTCGTGGGTG‑ACCCCGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5084758‑5084615‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcTCACCCCAGGCGCTGCCCCGAATCCGGCACGATCAGAATGCCGGCGCGCAAGCCGTTCTTGACCTTGGGGTTGGGGAAGATGATGCGCGCACCCTCCTCCTCGACCACCCAGCGCATCTCGGCCAGGTCTTCAGCCAGCAGGTAA > NC_002947/5084650‑5084794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |