| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5167753 = | 67 (1.030) | 7 (0.110) | 7/250 | NT | 10.3% | coding (127/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
| ? | NC_002947 | 5167791 = | 58 (0.940) | coding (89/3906 nt) | hrpA | ATP‑dependent helicase HrpA | |||||
AGGCTCACCTGCATCACTAAAAAGCCCCATGACTGACCACGCCATCGACAAACTGCTGCAAAACCTCGACCACGCCATGATTGCCGACCGCCAT‑‑TGCCTGCGCCGGCAACTGCACGAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5167907‑5167753‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagtTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCG > NC_002947/5167791‑5167937 AGGCTCACCTGCATCACTAAAAAGCCCCATGACTGACCACGCCATCGACAAACTGCTGCAAAACCTCGACCACGCCATGATTGCCGACCGCCAT‑‑TGCCTGCGCCGGCAACTGCACGAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGG < 4:179466/149‑1AGGCTCACCTGCATCACTAAAAAGCCCCATGACTGACCACGCCATCGACAAACTGCTGCAAAACCTCGACCACGCCATGATTGCCGACCGCCAT‑‑TGCCTGCGCCGGCAACTGCACGAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGG < 5:75372/149‑1 ACCTGCATCACTAAAAAGCCCCATGACTGACCACGCCATCGACAAACTGCTGCAAAACCTCGACCACGCCATGATTGCCGACCGCCAT‑‑TGCCTGCGCCGGCAACTGCACGAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGT < 6:234616/149‑1 ACCTGCATCACTAAAAAGCCCCATGACTGACCACGCCATCGACAAACTGCTGCAAAACCTCGACCACGCCATGATTGCCGACCGCCAT‑‑TGCCTGCGCCGGCAACTGCACGAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAG < 7:211743/148‑1 cttCATCACTAAAAAGCCCCATGACTGACCACGCCATCGACAAACTGCTGCAAAACCTCGACCACGCCATGATTGCCGACCGCCATACTGCCTGCGCCGGCAACTGCACGAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGT < 1:320185/146‑1 ACGAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGA > 5:19002/1‑115 ACGAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGA < 6:19002/115‑1 GAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCA > 5:314915/1‑101 GAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCA < 6:314915/101‑1 AACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGG > 2:27736/1‑149 ACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGT < 1:27736/149‑1 CTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGT > 5:239879/1‑148 CGCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAA < 5:11239/148‑1 GCAGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAG > 4:291384/1‑149 AGTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTC > 7:121874/1‑149 GTTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCG > 5:88375/1‑149 AGGCTCACCTGCATCACTAAAAAGCCCCATGACTGACCACGCCATCGACAAACTGCTGCAAAACCTCGACCACGCCATGATTGCCGACCGCCAT‑‑TGCCTGCGCCGGCAACTGCACGAACTGCGCAAGCGCCCCGACGAGGCGAAGCTGGCGCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5167907‑5167753‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagtTCGTGCAGTTGCCGGCGCAGGCAATGGCGGTCGGCAATCATGGCGTGGTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCG > NC_002947/5167791‑5167937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |