New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5225821	69 (1.060)	4 (0.060)	4/254	NT	6.0%	coding (59/876 nt)	PP_4605	AraC family transcriptional regulator
	?	NC_002947	= 5225852	60 (0.960)					coding (90/876 nt)	PP_4605	AraC family transcriptional regulator

TCTGGCTGCTTGCACAAACTTGCGCTTTTCTTGCGCCGGTAGCTGTCACTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5225671‑5225821 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCTGGCA  <  NC_002947/5225852‑5225816                                                                                                                                                                                              TCTGGCTGCTTGCACAAACTTGCGCTTTTCTTGCGCCGGTAGCTGTCACTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGC                                          >  6:341595/1‑148     GCTGCTTGCACAAACTTGCGCTTTTCTTGCGCCGGTAGCTGTCACTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGACCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCA                                        <  5:395389/146‑1                                                ACTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCTGG    <  7:165623/139‑1                                                ACTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGTCCGTCGCCCAGGTGCGCGCTAAGCTCCAGCCTGG    >  8:165623/1‑139                                                   CGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCTGGCA  <  3:48246/138‑1                                                   CGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAGTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCTGGCA  >  4:48246/1‑138                                                                                                                                                                                              TCTGGCTGCTTGCACAAACTTGCGCTTTTCTTGCGCCGGTAGCTGTCACTCGATCCAGGGCGCAGTAGGATGGCAGGCAAGAGGACCCGCCCATGACGCCACTCACCCAGTTGCAAGTGTTCAACGCCATGCATGCCTCGCCCAATGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5225671‑5225821 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagTCCGTCGCCCAGGTGCGCGCTCAGCTCCAGCCTGGCA  <  NC_002947/5225852‑5225816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.