New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5366891 =	82 (1.260)	4 (0.060)	3/250	NT	5.3%	coding (486/624 nt)	rlmE	ribosomal RNA large subunit methyltransferase E
	?	NC_002947	5366942 =	66 (1.070)					coding (435/624 nt)	rlmE	ribosomal RNA large subunit methyltransferase E

GGCGATTCGCATGTAGACCTTGTGATTTCCGACATGGCCCCCAATATGAGTGGTACGCCCGCGGTGGACATTCCGCGTGCCATGTTCCTCTGCGAGCTGGCCCTTGATCTGGCGACCCGCGTACTCAAGCCCGGGGGCGACTTCCTGATCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5367043‑5366891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcaagGGCCAGCTCGCAGAGGAACATGGCACGCGGAATGTCCACCGCGGGCGTACCACTCATATTGGGGGCCATGTCGGAAATCACAAGGTCTACATGCGAATCG  >  NC_002947/5366942‑5367041                                                                                                                                                                                                                                                               GGCGATTCGCATGTAGACCTTGTGATTTCCGACATGGCCCCCAATATGAGTGGTACGCCCGCGGTGGACATTCCGCGTGCCATGTTCCTCTGCGAGCTGGCCCTTGATCTGGCGACCCGCGTACTCAAGCCCGGGGGCGACTTCCTGAT                                                                                                          >  7:116099/1‑149   CGATTCGCATGTAGACCTTGTGATTTCCGACATGGCCCCCAATATGAGTGGTACGCCCGCGGTGGACATTCCGCGTGCCATGTTCCTCTGCGAGCTGGCCCTTGATCTGGCGACCCGCGTACTCAAGCCCGGGGGCGACTTCCTGATCA                                                                                                        <  8:116099/149‑1    GATTCGCATGTAGACCTTGTGATTTCCGACATGGCCCCCAATATGAGTGGTACGCCCGCGGTGGACATTCCGCGTGCCATGTTCCTCTGCGAGCTGGCCCTTGATCTGGCGACCCGCGTACTCAAGCCCGGGGGCGACTTCCTGATCAA                                                                                                       <  3:128666/149‑1    GATTCGCATGTAGACCTTGTGATTTCCGACATGGCCCCCAATATGAGTGGTACGCCCGCGGTGGACATTCCGCGTGCCATGTTCCTCTGCGAGCTGGCCCTTGATCTGGCGACCCGCGTACTCAAGCCCGGGGGCGACTTCCTGATCAA                                                                                                       <  4:361945/149‑1                                                                                                      CCTTGATCTGGCGACCCGCGTACTCAAGCCCGGGGGCGACTTCCTGATCAAGGGCCAGCTCGCAGAGGAACATGGCACGCGGAATGTCCACCGCGGGCGTACCACTCATATTGGGGGCCATGTCGGAAATCACAAGGTCTACATGCGA      >  8:179455/1‑148                                                                                                      CCTTGATCTGGCGACCCGCGTACTCAAGCCCGGGGGCGACTTCCTGATCAAGGGACAGCTCGCAGAGGAACATGGCACGCGGAATGTCCACCGCGGGCGTACCACTCATATTGGGGGCCATGTCGGAAATCACAAGGTCTACATGCGA      >  8:330498/1‑148                                                                                                       CTTGATCTGGCGACCCGCGTACTCAAGCCCGGGGGCGACTTCCTGATCAAGGGCCAGCTCGCAGAGGAACATGGCACGCGGAATGTCCACCGCGGGCGTACCACTCATATTGGGGGCCATGTCGGAAATCACAAGGTCTACATGCGAAT    >  8:374291/1‑149                                                                                                          GATCTGGCGACCCGCGTACTCAAGCCCGGGGGCGACTTCCTGATCAAGGGCCAGCTCGCAGAGGAACATGGCACGCGGAATGTCCACCGCGGGCGTACCACTCATATTGGGGGCCATGTCGGAAATCACAAGGTCTACATGCGAATCG  <  7:179455/148‑1                                                                                                                                                                                                                                                               GGCGATTCGCATGTAGACCTTGTGATTTCCGACATGGCCCCCAATATGAGTGGTACGCCCGCGGTGGACATTCCGCGTGCCATGTTCCTCTGCGAGCTGGCCCTTGATCTGGCGACCCGCGTACTCAAGCCCGGGGGCGACTTCCTGATCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5367043‑5366891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcaagGGCCAGCTCGCAGAGGAACATGGCACGCGGAATGTCCACCGCGGGCGTACCACTCATATTGGGGGCCATGTCGGAAATCACAAGGTCTACATGCGAATCG  >  NC_002947/5366942‑5367041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.