| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5404344 | 60 (0.920) | 5 (0.090) | 5/232 | NT | 7.5% | intergenic (‑642/+75) | PP_4746/PP_4748 | transposase/amino acid ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 5404374 | 71 (1.240) | intergenic (‑672/+45) | PP_4746/PP_4748 | transposase/amino acid ABC transporter substrate‑binding protein | |||||
GTGCCGTGGGCCAGGCAGAGCTGGCGCGCGAAGGTGGTGGCATCGGCCAGCGACAGGCGCTTTTCGGGTTTGTCGTCGTCCATGGGGGCTTCGGTGCTCTCGGGTTGAAGGTGTGCCGCAGCCAGCGAACCTGCAAGGGAGGCGGTAGCCGCGAATGAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5404184‑5404344‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagccgcgaatgaacgCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTACCGCCTCCCTTGCAGGTTCGCTGGCTGCGGCACACCTTCAACCCGAGAGCACCGAAGCCCCCATGGACGACGACAAACCCGAAAAGCGCCTGTCGCTGGCC < NC_002947/5404374‑5404228 GTGCCGTGGGCCAGGCAGAGCTGGCGCGCGAAGGTGGTGGCATCGGCCAGCGACAGGCGCTTTTCGGGTTTGTCGTCGTCCATGGGGGCTTCGGTGCTCTCGGGTTGAAGGTGTGCCGCAGCCAGCGAACCTGCAAGGGAGGCGGTAGC > 8:257322/1‑149GTGCCGTGGGCCACGCAGAGCTGGCGCGCGAAGGTGGTGGCATCGGCCAGCGACAGGCGCTTTTCGTGTTTGTCGTCGTCCATGGGGGCTTCGGTGCTCTCGGGTTGAAGGTCTGCCGCAGCCAGCGAACCTGCAAGGGAGGCGGTAGC > 2:84291/1‑149 GCCGTGGGCCAGGCAGAGCTGGCGCGCGAAGGTGGTGGCATCGGCCAGCGACAGGCGCTTTTCGGGTTTGTCGTCGTCCATGGGGGCTTCGGTGCTCTCGGGTTGAAGGTGTGCCGCAGCCAGCGAACCTGCAAGGGAGGCGGTAGCCG > 5:256376/1‑149 TGGGCCAGGCAGAGCTGGCGCGCGAAGGTGGTGGCATCGGCCAGCGACAGGCGCTTTTCGGGTTTGTCGTCGTCCATGGGGGCTTCGGTGCTCTCGGGTTGAAGGTGTGCCGCAGCCAGCGAACCTGCAAGGGAGGCGGTAGCCGCGAA < 1:197657/149‑1 GCCAGGCAGAGCTGGCGCGCGAAGGTGGTGGCATCGGCCAGCGACAGGCGCTTTTCGGGTTTGTCGTCGTCCATGGGGGCTTCGGTGCTCTCGGGTTGAAGGTGTGCCGCAGCCAGCGAACCTGCAAGGGAGGCGGTAGCCGCGAATG > 4:16879/1‑148 CCAGGCAGATCTGGCGCGCGAAGGTGGTGGCATCGGCCAGCGACAGGCGCTTTTCGGGTTTGTCGTCGTCCATGGGGGCTTCGGTGCTCTCGGGTTGAAGGTGTGCCGCAGCCAGCGAACCTGCAAGGGAGGCGGTAGCCGCGAATGAA < 5:417409/149‑1 ATCGGCCAGCGACAGGCGCTTTTCGGGTTTGTCGTCGTCCATGGGGGCTTCGGTGCTCTCGGGTTGAAGGTGTGCCGCAGCCAGCGAACCTGCAAGGGAGGCGGTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTA > 5:182529/1‑149 ATCGGCCAGCGACAGGCGCTTTTCGGGTTTGTCGTCGTCCATGGGGGCTTCGGTGCTCTCGGGTTGAAGGTGTGCCGCAGCCAGCGAACCTGCAAGGGAGGCGGTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTA < 1:220208/149‑1 GACAGGCGCTTTTCGGGTTTGTCGTCGTCCATGGGGGCTTCGGTGCTCTCGGGTTGAAGGTGTGCCGCAGCCAGCGAACCTGCAAGGGAGGCGGTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTC < 6:182529/149‑1 GGTTTGTCGTCGTCCATGGGGGCTTCGGTGCTCTCGGGTTGAAGGTGTGCCGCAGCCAGCGAACCTGCAAGGGAGGCGGTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCG < 1:79520/135‑1 GGTTTGTCGTCGTCCATGGGGGCTTCGGTGCTCTCGGGTTGAAGGTGTGCCGCAGCCAGCGAACCTGCAAGGGAGGCGGTAGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCG > 2:79520/1‑135 AGCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTACCGCCTCCCTTGCAGGTTCGCTGGCTGCGGCACACCTTCAACCCGAGAGCACCGAAGCCCCCATGGACGACGACAAACCCGAAAAGC < 4:221744/148‑1 GCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTACCGCCTCCCTTGCAGGTTCGCTGGCTGCGGCACA > 2:176391/1‑94 GCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTACCGCCTCCCTTGCAGGTTCGCTGGCTGCGGCACA < 1:176391/94‑1 GCCGCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTACCGCCTCCCTTGCAGGTTCGCTGGCGGCGGCACACCGTCAACCCGAGAGCACCGAAGCCCCCATGGACGACGACACACCCGAAAAGCGC > 4:206018/1‑149 GCGAATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTACCGCCTCCCTTGCAGGTTCGCTGGCTGCGGCACACCTTCAACCCGAGAGCACCGAAGCCCCCATGGACGACGACAAACCCGAAAAGCGCCTG > 6:256376/1‑149 ATGAACGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTACCGCCTCCCTTGCAGGTTCGCTGGCTGCGGCACACCTTCAACCCGAGAGCACCGAAGCCCCCATGGACGACGACAAACCCGAAAAGCGCCTGTCGC < 3:12833/149‑1 CGCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTACCGCCTCCCTTGCAGATTCGCTGGCTGCGGCACACCTTCAACCCGAGAGCACCGAAGCCCCCATGGACGACGACAAACCCGAAAAGCGCCTGTCGCTGGCC > 1:372767/1‑149 GCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTACCGCCTCCCTTGCAGGTTCGCTGGCTGCGGCACACCTTCAACCCGAGAGCACCGACGCCCCCATGGACGACGACAAACCCGAAAAGCGCCTGTCGCTGGCC > 4:167445/1‑148 GCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTACCGCCTCCCTTGCAGGTTCGCTGGCTGCGGCACACCTTCAACCCGAGAGCACCGAAGCCCCCATGGACGACGACAAACCCGAAAAGCGCCTGTCGCTGGCC > 1:244192/1‑148 GTGCCGTGGGCCAGGCAGAGCTGGCGCGCGAAGGTGGTGGCATCGGCCAGCGACAGGCGCTTTTCGGGTTTGTCGTCGTCCATGGGGGCTTCGGTGCTCTCGGGTTGAAGGTGTGCCGCAGCCAGCGAACCTGCAAGGGAGGCGGTAGCCGCGAATGAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5404184‑5404344‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagccgcgaatgaacgCACCGCGAGCTTTCAGGAATGAGGCGTTATCGTTCATTCGCGGCTACCGCCTCCCTTGCAGGTTCGCTGGCTGCGGCACACCTTCAACCCGAGAGCACCGAAGCCCCCATGGACGACGACAAACCCGAAAAGCGCCTGTCGCTGGCC < NC_002947/5404374‑5404228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |