New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5540637 =	68 (1.040)	4 (0.060)	3/256	NT	5.8%	coding (349/2355 nt)	PP_4872	hypothetical protein
	?	NC_002947	5540669 =	63 (1.000)					coding (317/2355 nt)	PP_4872	hypothetical protein

TTCATGAAGCTCGGCGAACCGAACCTGTTCTTCGGTGTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5540679‑5540637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgAGCTTCATGAAGTCGTCTTTCGACTGCCAGTTCGGCTGGGCGATGATGCCCACGCGGAAGCCTTGGGCTTCCAGCAGACGGCCAATGATGGCCATGCCGAACGACGGATGGTCGACGTAGGCATCACCGGTC  >  NC_002947/5540669‑5540800                                                                                                                                                                                 TTCATGAAGCTCGGCGAACCGAACCTGTTCTTCGGTGTGGCCGAGCTTCATGAAGTCGTCTTTCGACTGCCAGTTCGGCTGGGCGATGATGCCCACGCGGAAGCCTTGGGCTTCCAGCAGACGGCCAATGATGGCCATGCCGAACGACG                            >  2:234580/1‑149     TGAAGCTCGGCGAACCGAACCTGTTCTTCGGTGTGGCCGAGCTTCATGAAGTCGTCTTTCGACTGCCAGTTCGGCTGGGCGATGATGCCCACGCGGAAGCCTTGGGCTTCCAGCAGACGGCCAATGATGGCCATGCCGAACGACGGATG                        >  1:336784/1‑149      GAAGCTCGGCGAACCGAACCTGTTCTTCGGTGTGGCCGAGCTTCATGAAGTCGTCTTTCGACTGCCAGTTCGGCTGGGCGATGATGCCCACGCGGAAGCCTTGGGCTTCCAGCAGACGGCCAATGATGGCCATGCCGAACGACGGATGG                       >  5:178912/1‑149             GGCGAACCGAACCTGTTCTTCGGTGTGGCCGAGCTTCATGAAGTCGTCTTTCGACTGCCAGTTCGGCTGGGCGATGATGCCCACGCGGAAGCCTTGGGCTTCCAGCAGACGGCCAATGATGGCCATGCCGAACGACGGATGGTCGAa                  <  2:336784/147‑2                                         CCGAGCTTCATGAAGTCGTCTTTCGACTGCCAGTTCGGCTGGGCGATGATGCCCACGCGGAAGCCTTGGGCTTCCAGCAGACGGCCAATGATGGCCATGCCGAACGACGGATGGTCGACGTAGGCATCACCGGTC  >  7:202905/1‑135                                         CCGAGCTTCATGAAGTCGTCTTTCGACTGCCAGTTCGGCTGGGCGATGATGCCCACGCGGAAGCCTTGGGCTTCCAGCAGACGGCCAATGATGGCCATGCCGAACGACGGATGGTCGACGTAGGCATCACCGGTC  <  8:202905/135‑1                                          CGAGCTTCATGAAGTCGTCTTTCGACTGCCAGTTCGGCTGGGCGATGATGCCCACGCGGAAGCCCAAGGCTTCCgc                                                            <  3:308577/76‑3                                          CGAGCTTCATGAAGTCGTCTTTCGACTGCCAGTTCGGCTGGGCGATGATGCCCACGCGGAAGCCCAAGGCTTCCgc                                                            >  4:308577/1‑74                                                                                                                                                                                 TTCATGAAGCTCGGCGAACCGAACCTGTTCTTCGGTGTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5540679‑5540637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgAGCTTCATGAAGTCGTCTTTCGACTGCCAGTTCGGCTGGGCGATGATGCCCACGCGGAAGCCTTGGGCTTCCAGCAGACGGCCAATGATGGCCATGCCGAACGACGGATGGTCGACGTAGGCATCACCGGTC  >  NC_002947/5540669‑5540800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.