New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5811876	69 (1.060)	4 (0.060)	4/250	NT	6.0%	coding (1204/2220 nt)	priA	primosome assembly protein
	?	NC_002947	= 5811907	59 (0.960)					coding (1235/2220 nt)	priA	primosome assembly protein

GAGAACATCCCGATCCTGCTCGGTTCCGCCACACCGTCGCTGGAAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5811726‑5811876 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgcTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTCACATCAAGGCGCAGCATGCGCGGCGGGCGTGCCCCTCCGGCGCGTTGGTTCATACGCAGCAGGCGGTAGCGGCCGGTCAGGGCGTTATGCAGGGTTTCCAGC  <  NC_002947/5811907‑5811764                                                                                                                                                                                                                                                                                                         GAGAACATCCCGATCCTGCTCGGTTCCGCCACACCGTCGCTGGAAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCT                                                                                                                                                    <  8:284114/149‑1                                          GGAAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTC                                                                                                           <  8:178283/149‑1                                            AAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTT                                                                                                         <  8:314853/149‑1                                                 CTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTC                                                                                                        >  5:31134/1‑145                                                 CTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTC                                                                                                        <  6:31134/145‑1                                                                                                                                                  GCCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTCACATCAAGGCGCAGCATGCGCGGCGGGCGTGCCCCTCCGGCGCGTTGGTTCATACGCAGCAGGCGGTAGCGGCCGGTCAGGGCGTTATGCAGGGTTTCCAG   <  7:205288/149‑1                                                                                                                                                  GCCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTCACATCAAGGCGCAGCATGCGCGGCGGGCGTGCCCCTCCGGCGCGTTGGTTCATACGCAGCAGGCGGTAGCGGCCGGTCAGGGCGTTATGCAGGGTTTCCA    <  2:403428/148‑1                                                                                                                                                  GCCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTCACATCAAGGCGCAGCATGCGCGGCGGGCGTGCCCCTCCGGCGCGTTGGTTCATACGCAGCAGGCGGTAGCGGCCGGTCAGGGCGTTATGCAGGGTTTCCA    <  5:256549/148‑1                                                                                                                                                   CCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTCACATCAAGGCGCAGCATGCGCGGCGGGCGTGCCCCTCCGGCGCGTTGGTTCATACGCAGCAGGCG                                       >  1:369249/1‑112                                                                                                                                                   CCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTCACATCAAGGCGCAGCATGCGCGGCGGGCGTGCCCCTCCGGCGCGTTGGTTCATACGCAGCAGGCG                                       <  2:369249/112‑1                                                                                                                                                    CTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTCACATCAAGGCGCAGCATGCGCGGCGGGCGTGCCCCTCCGGCGCGTTGGTTCATACGCAGCAGGCGGTAGCGGCCGGTCAGGGCGTTATGCAGGGTTTCCAGC  >  8:45606/1‑148                                                                                                                                                                                                                                                                                                         GAGAACATCCCGATCCTGCTCGGTTCCGCCACACCGTCGCTGGAAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5811726‑5811876 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgcTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTCACATCAAGGCGCAGCATGCGCGGCGGGCGTGCCCCTCCGGCGCGTTGGTTCATACGCAGCAGGCGGTAGCGGCCGGTCAGGGCGTTATGCAGGGTTTCCAGC  <  NC_002947/5811907‑5811764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.