New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5875315	61 (0.940)	5 (0.080)	5/258	NT	7.2%	coding (856/1515 nt)	ilvA‑II	threonine deaminase
	?	NC_002947	= 5875360	70 (1.100)					coding (811/1515 nt)	ilvA‑II	threonine deaminase

GGATGGTCACGGCGATGATCGCCTCGCGCTTTTCACCCAGCTCGGCACGTTCGGCCACATGGCGCAGGCGATCGAAATTGACGT‑TGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5875165‑5875315 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatACCCGCTCGATCACCGAGCCTGCTGGCGCGCTGGGTGTGGCGGGCATCAAGAAGTACGTCGAGCTATACGG  <  NC_002947/5875360‑5875290                                                                                                                                                                                                                                 GGATGGTCACGGCGATGATCGCCTCGCGCTTTTCACCCAGCTCGGCACGTTCGGCCACATGGCGCAGGCGATCGAAATTGACGT‑TGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTG                                                                           <  2:319082/149‑1                                     CCAGCTCGGCACGTTCGGCCACATGGCGCAGGCGATCGAAATTGACGTATGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGATACCCGCTCGATCACCGAGCCTGCTGGCGCGCTG                                        >  1:94153/1‑149                                                    atGCCACATGGCGCAGGCGATCGAAATTGACGT‑TGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGATACCCGCTCGATCACCGAGCCTGCTGGCGCGCTGGGTGTGGCGGGCATC                         <  8:125559/146‑1                                                      GCCACATGGCGCAGGCGATCGAAATTGACGT‑TGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGATACCCGCTCGATCACCGAGCCTGCTGGCGCGCTGGGTGTGGCGGGCATCAAG                      <  2:94153/149‑1                                                         ACATGGCGCAGGCGATCGAAATTGACGT‑TGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGATACCCGCTCGATCACCGAGCCTGCTGGCGCGCTGGGTGTGGCGGGCATCAAGAAG                   <  5:78571/149‑1                                                                          GAAATTGACGT‑TGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGATCCCCGCTCGATCACCGAGCCTGCTGGCGCGCTGGGTGTGGCGGGCATCAAGAAGTACGTCGAGCTATACGG  <  7:120223/149‑1                                                                                                                                                                                                                                 GGATGGTCACGGCGATGATCGCCTCGCGCTTTTCACCCAGCTCGGCACGTTCGGCCACATGGCGCAGGCGATCGAAATTGACGT‑TGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5875165‑5875315 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatACCCGCTCGATCACCGAGCCTGCTGGCGCGCTGGGTGTGGCGGGCATCAAGAAGTACGTCGAGCTATACGG  <  NC_002947/5875360‑5875290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.