New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 596236070 (1.080)7 (0.120) 6/246 NT 9.8% coding (37/864 nt) dapF diaminopimelate epimerase
?NC_002947 = 5962379 63 (1.040)coding (56/864 nt) dapF diaminopimelate epimerase

CGGGCGCCTATGGTTTTGTCATGAGCTCCAACTACAACACCCGCGGCCGTTGCGCTGAAATCCTGGTCGACGGCGACCAGGCGTTCGAAGTACGCCGCCGCGAGACCGTCGCCGAACTGTATGCTGGCGAAAGCCTGCTGCCGGAGTAAGCCCATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5962204‑5962360
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccatgcATCTTGGTAAAACGCAGCAGCATGGGCTTACTCCGGCAGCAGGCTTTCGCCAGCATACAGTTCGGCGACGGTCTCGCGGCGGCGTACTTCGAACGCCTGGTCGCCGTCGACCAGGATTTCAGCGCAACGGCCGCGGGTGTTGTAGTTG  <  NC_002947/5962379‑5962232
                                                                                                                                                                                                                                                                                                                 
CGGGCGCCTATGGTTTTGTCATGAGCTCCAACTACAACACCCGCGGCCGTTGCGCTGAAATCCTGGTCGACGGCGACCAGGCGTTCGAAGTACGCCGCCGCGAGACCGTCGCCGAACTGTATGCTGGCGAAAGCCTGCTGCCGGAGTAA                                                                                                                                                              <  7:16012/149‑1
     GCCTATGGTTTTGTCATGAGCTCCAACTACAACACCCGCGGCCGTTGCGCTGAAATCCTGGTCGACGGCGACCAGGCGTTCGAAGTACGCCGCCGCGAGACCGTCGCCGAACTGTATGCTGGCGAAAGCCTGCTGCCGGAGTAAGCCCA                                                                                                                                                         >  4:361446/1‑149
       CTATGGTTTTGTCATGAGCTCCAACTACAACACCCGCGGCCGTTGCGCTGAAATCCTGGTCGACGGCGACCAGGCGTTCGAAGTACGCCGCCGCGAGACCGTCGCCGAACTGTATGCTGGCGAAAGCCTGCTGCCGGAGTAAGCCCATG                                                                                                                                                       >  5:255846/1‑149
                          TCCAACTACAACACCCGCGGCCGTTGCGCTGAAATCCTGGTCGACGGCGACCAGGCGTTCGAAGTACGCCGCCGCGAGACCGTCGCCGAACTGTATGCTGGCGAAAGCCTGCTGCCGGAGTAAGCCCATGCATCTTGGTAAAACGCAG                                                                                                                                     >  1:177846/1‑148
                                  CAACACCCGCGGCCGTTGCGCTGAAATCCTGGTCGACGGCGACCAGGCGTTCGAAGTACGCCGCCGCGAGACCGTCGCCGAACTGTATGCTGGCGAAAGCCTGCTGCCGGAGTAAGCCCATGCATCTTGGTAAAACGCAGCAGCATGGG                                                                                                                            <  2:177846/149‑1
                                  CAACACCCGCGGCCGTTGCGCTGAAATCCTGGTCGACGGCGACCAGGCGTTCGAAGTACGCCGCCGCGAGACCGTCGCCGAACTGTATGCTGGCGAAAGCCTGCTGCCGGAGTAAGCCCATGCATCTTGGTAAAACGCAGCAGCATGG                                                                                                                             <  4:119191/148‑1
                                  CAACACCCGCGGCCGTTGCGCTGAAATCCTGGTCGACGGCGACCAGGCGTTCGAAGTACGCCGCCGCGAGACCGTCGCCGAACTGTATGCTGGCGAAAGCCTGCTGCCGGAGTAAGCCCATGCATCTTGGTAAAACGCAGCAGCATGG                                                                                                                             <  4:29717/148‑1
                                       CCCGCGGCCGTTGCGCTGAAATCCTGGTCGACGGCGACCAGGCGTTCGAAGTACGCCGCCGCGAGACCGTCGCCGAACTGTATGCTGGCGAAAGCCTGCTGCCGGAGTAAGCCCATGCATCTTGGTAAAACGCAGCAGCATGGGCTTAC                                                                                                                       <  7:88781/149‑1
                                                                                             GCCGCCGCGAGACCGTCGCCGAACTGTATGCTGGCGAAAGCCTGCTGCCGGAGTAAGCCCATGCATCTTGGTAAAACGCAGCAGCATGGGCTTACTC                                                                                                                     >  1:388503/1‑97
                                                                                             GCCGCCGCGAGACCGTCGCCGAACTGTATGCTGGCGAAAGCCTGCTGCCGGAGTAAGCCCATGCATCTTGGTAAAACGCAGCAGCATGGGCTTACTC                                                                                                                     <  2:388503/97‑1
                                                                                                                                                     GCCCATGCATCTTGGTAAAACGCAGCAGCATGGGCTTACTCCGGCAGCAGGCTTTCGCCAGCATACAGTTCGGCGACGGTCTCGCGGCGGCGTACTTCGAACGCCTGGTCGCCGTCGACCAGGATTTCAGCGCAACGGCCGCGGGTGTT         <  2:59764/149‑1
                                                                                                                                                       CCATGCATCTTGGTAAAACGCAGCAGCATGGGCTTACTCCGGCAGCAGGCTTTCGCCAGCATACAGTTCGGCGACGGTCTCGCGGCGGCGTACTTCGAACGCCTGGTCGCCGTCGACCAGGATTTCAGCGCAACGGCCGCGGGTGTTG        >  8:215454/1‑148
                                                                                                                                                        CATGCATCTTGGTAAAACGCAGCAGCATGGGCTTACTCCGGCAGCAGGCTTTCGCCAGCATACAGTTCGGCGACGGTCTCGCGGCGGCGTACTTCGAACGCCTGGTCGCCGTCGACCAGGATTTCAGCGCAACGGCCGCGGGTGTTGTA      >  3:231418/1‑149
                                                                                                                                                         ATGCATCTTGGTAAAACGCAGCAGCATGGGCTTACTCCGGCAGCAGGCTTTCGCCAGCATACAGTTCGGCGACGGTCTCGCGGCGGCGTACTTCGAACGCCTGGTCGCCGTCGACCAGGATTTCAGCGCAACGGCCGCGGGTGTTGTAG     <  6:41534/149‑1
                                                                                                                                                         ATGCATCTTGGTAAAACGCAGCAGCATGGGCTTACTCCGGCAGCAGGCTTTCGCCAGCATACAGTTCGGCGACGGTCTCGCGGCGGCGTACTTCGAACGCCTGGTCGCCGTCGACCAGGATTTCAGCGCAACGGCCGCGGGTGTTGTAG     >  2:341906/1‑149
                                                                                                                                                           GCATCTTGGTAAAACGCAGCAGCATGGGCTTACTCCGGCAGCAGGCTTTCGCCAGCATACAGTTCGGCGACGGTCTCGCGGCGGCGTACTTCGAACGCCTGGTCGCCGTCGACCAGGATTTCAGCGCAACGGCCGCGGGTGTTGTAGTT   >  7:210754/1‑149
                                                                                                                                                            CATCTTGGTAAAACGCAGCAGCATGGGCTTACTCCGGCAGCAGGCTTTCGCCAGCATACAGTTCGGCGACGGTCTCGCGGCGGCGTACTTCGAACGCCTGGTCGCCGTCGACCAGGATTTCAGCGCAACGGCCGCGGGTGTTGTAGTTG  <  1:369639/149‑1
                                                                                                                                                            CATCTTGGTAAAACGCAGCAGCATGGGCTTACTCCGGCAGCAGGCTTTCGCCAGCATACAGTTCGGCGACGGTCTCGCGGCGGCGTACTTCGAACGCCTGGTCGCCGTCGACCAGGATTTCAGCGCAACGGCCGCGGGTGTTGTAGTT   <  7:144482/148‑1
                                                                                                                                                            CATCTTGGTAAAACGCAGCAGCATGGGCTTACTCCGGCAGCAGGCTTTCGCCAGCATACAGTCCGGCGACGGTCTCGCGGCGGCGTACTTCGAACGCCTGGTCGCCGTCGACCAGGATTTCAGCGCAACGGCCGCGGGTGTTGTAGTTG  <  7:215454/149‑1
                                                                                                                                                                                                                                                                                                                 
CGGGCGCCTATGGTTTTGTCATGAGCTCCAACTACAACACCCGCGGCCGTTGCGCTGAAATCCTGGTCGACGGCGACCAGGCGTTCGAAGTACGCCGCCGCGAGACCGTCGCCGAACTGTATGCTGGCGAAAGCCTGCTGCCGGAGTAAGCCCATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5962204‑5962360
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccatgcATCTTGGTAAAACGCAGCAGCATGGGCTTACTCCGGCAGCAGGCTTTCGCCAGCATACAGTTCGGCGACGGTCTCGCGGCGGCGTACTTCGAACGCCTGGTCGCCGTCGACCAGGATTTCAGCGCAACGGCCGCGGGTGTTGTAGTTG  <  NC_002947/5962379‑5962232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.