New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6040029	94 (1.440)	6 (0.100)	5/250	NT	6.2%	coding (34/780 nt)	PP_5292	catabolite repression control protein
	?	NC_002947	= 6040072	92 (1.490)					coding (77/780 nt)	PP_5292	catabolite repression control protein

CGATGGCAAAACGGATAAAGTCGCGCTGATACGGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6039876‑6040029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcattcTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCATTTACGTTCACACTGATGATCCGCATAAATGGCCCCATAAATCTCGTGCGTGTATGATACCCGAGCTCAACCCATTTAGCTAAATCCGTGGTGTC  <  NC_002947/6040072‑6039927                                                                                                                                                                                                                                                                                                              CGATGGCAAAACGGATAAAGTCGCGCTGATACGGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATG                                                                                                                                                          <  8:294305/148‑1  GATGGCAAAACGGATAAAGTCGCGCTGATACGGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGG                                                                                                                                                         >  1:147036/1‑148                                 GGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGG                                                                                                                                                         <  6:146383/117‑1                                 GGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGG                                                                                                                                                         >  5:146383/1‑117                                   CTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACG                                                                                                                       >  4:176416/1‑149                                                 CCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGAATCATACACGCACGAGATTTATGGGGCCATTTATGCGGAGCATCAGTGTGAACGTAAATGGCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCT                                                                                                         <  7:378234/149‑1                                                       ACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGC                                                                                                   >  2:390918/1‑149                                                         CACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCA                                                                                                 <  3:39464/149‑1                                                           CGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCATT                                                                                               <  1:390918/149‑1                                                             GATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCATTca                                                                                             <  3:176416/149‑3                                                                                                                                                    GGCATTCTGGGCTTGCAGCGAGCTGAGCAAACGACGCGCGGCCGCAGTCTGATTGACATTTTCGTTCACAGTGATGATCCGCATAAATGGCCCCATAAATCTCGTGCGTGTATGATACCCGAGCTCAACCCATTTAGCTAAATCCGTG       <  4:35818/148‑1                                                                                                                                                    GGCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCATTTACGTTCACACTGATGATCCGCATAAATGGCCCCATAAATCTCGTGCGTGTATGATACCCGAGCTCAACCCATTTAGCTAAATCCGTG       <  1:342551/148‑1                                                                                                                                                    GGCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCATTTACGTTCACACTGATGATCCGCATAAATGGCCCCATAAATCTCGTGCGTGTATGATACCCGAGCTCAACCCATTTAGC                 >  2:165803/1‑138                                                                                                                                                    GGCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCATTTACGTTCACACTGATGATCCGCATAAATGGCCCCATAAATCTCGTGCGTGTATGATACCCGAGCTCAACCCATTTAGC                 <  1:165803/138‑1                                                                                                                                                     GCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCATTTACGTTCACACTGATGATCCGCATAAATGGCCCCATAAATCTCGTGCGTGTATGATACCCGAGCTCAACCCATTTAGCTAAATCCGTGGT     >  1:92374/1‑149                                                                                                                                                     GCATTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCATTTACGTTCACACTGATGATCCGCATAAATGGCCCCATAAATCTCGTGCGTGTATGATACCCGAGCTCAACCCATTTAGCTAAATCCGTGGT     <  5:225632/149‑1                                                                                                                                                        TTCTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCATTTACGTTCACACTGATGATCCGCATAAATGGCCCCATAAATCTCGTGCGTGTATGATACCCGAGCTCAACCCATTTAGCTAAATCCGTGGTGTC  >  5:43948/1‑149                                                                                                                                                                                                                                                                                                              CGATGGCAAAACGGATAAAGTCGCGCTGATACGGCTGCATGAATAGTCCCGGACACCACGGATTTAGCTAAATGGGTTGAGCTCGGGTATCATACACGCACGAGATTTATGGGGCCATTTATGCGGATCATCAGTGTGAACGTAAATGGCATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6039876‑6040029 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcattcTGGGCTTGCAGCCAGCTGAGCAAACCACGCTCGGCCGCAGCCTGAATGCCATTTACGTTCACACTGATGATCCGCATAAATGGCCCCATAAATCTCGTGCGTGTATGATACCCGAGCTCAACCCATTTAGCTAAATCCGTGGTGTC  <  NC_002947/6040072‑6039927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.