New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 606693162 (0.950)3 (0.050) 3/246 NT 4.5% coding (1055/1308 nt) phoR two‑component system sensor histidine kinase
?NC_002947 = 6066963 69 (1.140)coding (1087/1308 nt) phoR two‑component system sensor histidine kinase
Rejected: Frequency below/above cutoff threshold.

GCAACCAGCGCATCAACCTGGAAGCGGCGCCTGGCGTCAAGCTGAAGGGCAGCGAGTCGGAATTGCGCAGTGCCTTTTCCAATCTGGTGTTCAATGCAGTCAAGTACACCCAGGACGAAGGCAGCATCCGCATCCGCTGGTGGGCCGATGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6066778‑6066931
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgcccaCCCCCGAGTCCTGCACCGACAGGTGTGCGCCCTGGGCATCGGCCCACCAGCGGATGCGGATGCTGCCTTCGTCCTGGGTGTACTTGACTGCATTGAACACCAGATTGGAAAAGGCACTGCGCAATTCCGACTCGCTGCCCTTCAGC  <  NC_002947/6066963‑6066818
                                                                                                                                                                                                                                                                                                            
GCAACCAGCGCATCAACCTGGAAGCGGCGCCTGGCGTCAAGCTGAAGGGCAGCGAGTCGGAATTGCGCAGTGCCTTTTCCAATCTGGTGTTCAATGCAGTCAAGTACACCCAGGACGAAGGCAGCATCCGCATCCGCTGGTGGGCCGAT                                                                                                                                                         >  1:46142/1‑149
   ACCAGCGCATCAACCTGGAAGCGGCGCCTGGCGTCAAGCTGAAGGGCAGCGAGTCGGAATTGCGCAGTGCCTTTTCCAATCTGGTGTTCAATGCAGTCAAGTACACCCAGGACGAAGGCAGCATCCGCATCCGCTGGTGGGCCGATGCC                                                                                                                                                      >  2:118954/1‑149
   ACCAGCGCATCAACCAGGAAGCGGCGCCTGGCGTCAAGCTGAAGGGCAGCGAGTCGGAATTGCGCAGTGCCTTTTCCAATCTGGTGTTCAATGCAGTCAAGTACACCCAGGACGAAGGCAGCATCCGCATCCGCTGGTGGGCCGATGCC                                                                                                                                                      <  5:52053/149‑1
                                   GTCAAGCTGAAGGGCAGCGAGTCGGAATTGCGCAGTGCCTTTTCCAATCTGGTGTTCAATGCAGTCAAGTACACCCAGGACGAAGGCAGCATCCGCATCCGCTGGTGGGCCGATGCCCACCCCCGAGTCCTGCACCGACAGGTGTGCGC                                                                                                                      >  4:107791/1‑149
                                             AGGGCAGCGAGTCGGAATTGCGCAGTGCCTTTTCCAATCTGGTGTTCAATGCAGTCAAGTACACCCAGGACGAAGGCAGCATCCGCATCCGCTGGTGGGCCGATGCCCACCCCCGAGTCCTGCACCGACAGGTGTGCGCCCTGGGCATC                                                                                                            <  2:46142/149‑1
                                              GGGCAGCGAGTCGGAATTGCGCAGTGCCTTTTCCAATCTGGTGTTCAATGCAGTCAAGTACACCCAGGACGAAGGCAGCATCCGCATCCGCTGGTGGGCCGATGCCCACCCCCGAGTCCTGCACCGACAGGTGTGCGCCCTGGGCATCG                                                                                                           <  3:107791/149‑1
                                                                                         TTCAATGCAGTCAAGTACACCCAGGACGAAGGCAGCATCCGCATCCGCTGGTGGGCCGATGCC                                                                                                                                                      >  3:337976/1‑63
                                                                                         TTCAATGCAGTCAAGTACACCCAGGACGAAGGCAGCATCCGCATCCGCTGGTGGGCCGATGCC                                                                                                                                                      <  4:337976/63‑1
                                                                                                                                                  GATGCCCACCCCCGAGTCCTGCACCGACAGGTGTGCGCCCTGGGCATCGGCCCACCAGCGGATGCGGATGCTGCCTTCGTCCTGGGTGTACTTGACTGCATTGAACACCAGATTGGAAAAGGCACTGCGCAATTCCGACTCGCTGCCC        <  4:287253/148‑1
                                                                                                                                                    TGCCCACCCCCGAGTCCTGCACCGACAGGTGTGCGCCCTGGGCATCGGCCCACCAGCGGATGCGGATGCTGCCTTCGTCCTGGGTGTACTTGACTGCATTGAACACCAGATTGGAAAAGGCACTGCGCAATTCCGACTCGCTGCCCTTC     <  6:367/149‑1
                                                                                                                                                      CCCACCCCCGTGTCCTGCACCGACCGGTGTGCGCCCTGGGCATCGGCCCACCAGCGGATGCGGATGCTGGCTTCGTCCTGGGTGTACTTGACTGCATTGAACACCAGATTGGAAAAGGCACTGCGCAATTCCGACTCGCTGCCCTTCA    <  8:254100/148‑1
                                                                                                                                                      CCCACCCCCGAGTCCTGCACCGACAGGTGTGCGCCCTGGGCATCGGCCCACCAGCGGATGCGGATGCTGCCTTCGTCCTGGGTGTACTTGACTGCATTGAACACCAGATTGGAAAAGGCACTGCGCAATTCCGACTCGCTGCCCTTCAG   >  6:155196/1‑149
                                                                                                                                                      CCCACCCCCGAGTCCTGCACCGACAGGTGTGCGCCCTGGGCATCGGCCCACCAGCGGATGCGGATGCTGCCTTCGTCCTGGGTGTACTTGACTGCATTGAACACCAGATTGGAAAAGGCACTGCGCAATTCCGACTCGCTGCCCTTCA    <  8:254098/148‑1
                                                                                                                                                      CCCACCCCCGAGTCCTGCACCGACAGGTGTGCGCCCTGGGCATCGGCCCACCAGCGGATGCGGATGCTGCCTTCGTCCTGGGTGTACTTGACTGCATTGAACACCAGATTGGAAAAGGCACTGCGCAATTCCGACTCGCTGCCCTTCA    <  1:298055/148‑1
                                                                                                                                                       CCACCCCCGAGTCCTGCACCGACAGGTGTGCGCCCTGGGCATCGGCCCACCAGCGGATGCGGATGCTGCCTTCGTCCTGGGTGTACTTGACTGCATTGAACACCAGATTGGAAAAGGCACTGCGCAATTCCGACTCGCTGCCCTTCAGC  >  5:212905/1‑149
                                                                                                                                                       CCACCCCCGAGTCCTGCACCGACAGGTGTGCGCCCTGGGCATCGGCCCACCAGCGGATGCGGATGCTGCCTTCGTCCTGGGTGTACTTGACTGCATTGAACACCAGATTGGAAAAGGCACTGCGCAATTCCGACTCGCTGCCCTTCAGC  >  1:388077/1‑149
                                                                                                                                                       CCACCCCCGAGTCCTGCACCGACAGGTGTGCGCCCTGGGCATCGGCCCACCAGCGGATGCGGATGCTGCCTTCGTCCTGGGTGTACTTGACTGCATTGAACACCAGATTGGAAAAGGCACTGC                            >  3:296938/1‑123
                                                                                                                                                       CCACCCCCGAGTCCTGCACCGACAGGTGTGCGCCCTGGGCATCGGCCCACCAGCGGATGCGGATGCTGCCTTCGTCCTGG                                                                       >  7:135928/1‑80
                                                                                                                                                       CCACCCCCGAGTCCTGCACCGACAGGTGTGCGCCCTGGGCATCGGCCCACCAGCGGATGCGGATGCTGCCTTCGTCCTGG                                                                       <  8:135928/80‑1
                                                                                                                                                                                                                                                                                                            
GCAACCAGCGCATCAACCTGGAAGCGGCGCCTGGCGTCAAGCTGAAGGGCAGCGAGTCGGAATTGCGCAGTGCCTTTTCCAATCTGGTGTTCAATGCAGTCAAGTACACCCAGGACGAAGGCAGCATCCGCATCCGCTGGTGGGCCGATGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6066778‑6066931
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgcccaCCCCCGAGTCCTGCACCGACAGGTGTGCGCCCTGGGCATCGGCCCACCAGCGGATGCGGATGCTGCCTTCGTCCTGGGTGTACTTGACTGCATTGAACACCAGATTGGAAAAGGCACTGCGCAATTCCGACTCGCTGCCCTTCAGC  <  NC_002947/6066963‑6066818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.