| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6096455 | 81 (1.240) | 3 (0.050) | 3/248 | NT | 4.1% | coding (243/1416 nt) | pycA | pyruvate carboxylase subunit A |
| ? | NC_002947 | = 6096480 | 66 (1.080) | coding (218/1416 nt) | pycA | pyruvate carboxylase subunit A | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGCCCGGGGTTACCGGCACACCGGCGGCGATCATGGTGCGGCGCGCTTCGGTCTTGTCGCCCATACGGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAGGAAACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6096300‑6096455‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaaccgGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCTTTCGGAAAACGCTGAACTGGCAGAAATTTGCGCCGAGCGCGGGATCAAGTTCATCGGCCCGGCCGCCGACGTGATTCGCCGTATGGGCGACAAGACCGAAGCGCGCCGCACCAT < NC_002947/6096480‑6096333 GTGCCCGGGGTTACCGGCACACCGGCGGCGATCATGGTGCGGCGCGCTTCGGTCTTGTCGCCCATACGGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAG > 7:155077/1‑149GTGCCCGGGGTTACCGGCACACCGGCGGCGATCATGGTGCGGCGCGCTTCGGTCTTGTCGCCCATACGGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAG < 3:353792/149‑1 GCCCGGGGTTACCGGCACACCGGCGGCGATCATGGTGCGGCGCGCTTCGGTCTTGTCGCCCATACGGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAGG > 5:54314/1‑148 CCGGGGTTACCGGCACACCGGCGGCGATCATGGTGCGGCGCGCTTCGGTCTTGTCGCCCATACGGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAGGAAA < 5:220793/149‑1 CCGGGGTTACCGGCACACCGGCGGCGATCATGGTGCGGCGCGCTTCGGTCTTGTCGCCCATACGGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAGGAAA < 5:215281/149‑1 CCGGGGTTACCGGCACACCGGCGGCGATCATGGTGCGGCGCGCTTCGGTCTTGTCGCCCATACGGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCAGAAAGGAAA > 4:5774/1‑149 CGGGGTTACCGGCACACCGGCGGCGATCATGGTGCGGCGCGCTTCGGTCTTGTCGCCCATACGGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAGGAAAC < 5:53914/149‑1 GGGGTTACCGGCACACCGGCGGCGATCATGGTGCGGCGCGCTTCGGTCTTGTCGCCCATACGGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAGGAAACC < 1:353781/149‑1 GGGGTTACCGGCACACCGGCGGCGATCATGGTGCGGCGCGCTTCGGTCTTGTCGCCCATACGGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAGGAAACC < 6:71498/149‑1 GGGTTACCGGCACACCGGCGGCGATCATGGTGCGGCGCGCTTCGGTCTTGTCGCCCATACGGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAGGAAACCG > 5:310868/1‑149 GCACACCGGCGGCGATCATGGTGCGGCGCGCTTCGGTCTTGTCGCCCATACGGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGATCAGCGTTTTCCGAAAGGAAACC < 5:159984/139‑1 GCACACCGGCGGCGATCATGGTGCGGCGCGCTTCGGTCTTGTCGCCCATACGGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGATCAGCGTTTTCCGAAAGGAAACC > 6:159984/1‑139 cCGCGCATCGGTCTTGTCGCCCCAACGGCGAATCACGTCGGCGGCCGGGCCGATTAACTTGATCGCGCGCTCTGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAGGAAACCGGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCT < 4:293677/148‑1 GGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAGGAAACCGGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCTTT < 4:126443/125‑1 GGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAGGAAACCGGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCTTT > 3:126443/1‑125 TCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAGGAAAC > 5:84687/1‑51 TCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAGGAAAC < 6:84687/51‑1 GGAAACCGGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCTTTCGGAAAACGCTGAACTGGCAGAAATTTGCGCCGAGCGCGGGATCAAGTTCATCGGCCCGGCCGCCGACGTGATTCGCCGTATGGGCGACAAGACCGAAGCGCGCC > 6:195980/1‑149 GGAAACCGGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCTTTCGGAAAACGCTGAACTGGCAGAAATTTGCGCCGAGCGCGGGATCAAGTTCATCGGCCCGGCCGCCGACGTGATTCGCCGTATGGGCGACAAGACCGAAGCGCGCC > 2:128112/1‑149 GGAAACCGGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCTTTCGGAAAACGCTGAACTGGCAGAAATTTGCGCCGAGCGCGGGATCAAGTTCATCGGCCCGGCCGCCGACGTGATTCGCCGTATGGGCGACAAGACCGAAGCGCGCC > 8:157216/1‑149 GGAAACCGGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCTTTCGGAAAACGCTGAACTGGCAGAAATTTGCGCCGAGCGCGGGATCAAGTTCATCGGCCCGGCCGCCGACGTGATTCGCCGTATGGGCGACAAGACCGAA < 4:82083/142‑1 GGAAACCGGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCTTTCGGAAAACGCTGAACTGGCAGAAATTTGCGCCGAGCGCGGGATCAAGTTCATCGGCCCGGCCGCCGACGTGATTCGCCGTATGGGCGACAAGACCGAA > 3:82083/1‑142 GAAACCGGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCTTTCGGAAAACGCTGAACTGGCAGAAATTTGCGCCGAGCGAGGGATCAAGTTCATCGGCCCGGCCGCCGACGTGATTCGCCGTATGGGCGACAAGACCGAAGCGCGCCG > 7:261443/1‑149 AAACCGGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCTTTCGGAAAACGCTGAACTGGCAGAAATTTGCGCCGAGCGCGGGATCAAGTTCATCGGCCCGGCCGCCGACGTGATTCGCCGTATGGGCGACAAGACCGAAGCGCGCCG > 6:227912/1‑148 CGGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCTTTCGGAAAACGCTGAACTGGCAGAAATTTGCGCCGAGCGCGGGATCAAGTTCATCGGCCCGGCCGCCGACGTGATTCGCCGTATGGGCGACAAGACCGAAGCGCGCCGCACCA > 5:405263/1‑149 CGGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCTTTCGGAAAACGCTGAACTGGCAGAAATTTGCGCCGAGCGCGGGATCAAGTTCATCGGCCCGGCCGCCGACGTGATTCGCCGTATGGGCGACAAGACCGAAGCGCGCCGCACCA < 5:155597/149‑1 GGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCTTTCGGAAAACGCTGAACTGGCAGAAATTTGCGCCGAGCGCGGGATCAAGTTCATCGGCCCGGCCGCCGACGTGATTCGCCGTATGGGCGACAAGACCGAAGCGCGCCGCACCAT < 1:301403/149‑1 GGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCTTTCGGAAAACGCTGAACTGGCAGAAATTTGCGCCGAGCGCGGGATCAAGTTCATCGGCCCGGCCGCCGACGTGATTCGCCGTATGGGCGACAAGACCGAAGCGCGCCGCACCAT > 6:225057/1‑149 GTGCCCGGGGTTACCGGCACACCGGCGGCGATCATGGTGCGGCGCGCTTCGGTCTTGTCGCCCATACGGCGAATCACGTCGGCGGCCGGGCCGATGAACTTGATCCCGCGCTCGGCGCAAATTTCTGCCAGTTCAGCGTTTTCCGAAAGGAAACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6096300‑6096455‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaaccgGCTGTGATGCCCTGCACCCAGGCTACGGTTTCCTTTCGGAAAACGCTGAACTGGCAGAAATTTGCGCCGAGCGCGGGATCAAGTTCATCGGCCCGGCCGCCGACGTGATTCGCCGTATGGGCGACAAGACCGAAGCGCGCCGCACCAT < NC_002947/6096480‑6096333 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |