New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1311776	52 (0.800)	4 (0.070)	3/246	NT	9.6%	intergenic (‑244/+34)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
	?	NC_002947	5594166 =	27 (0.450)					intergenic (‑113/+32)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase

CTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACT  >  NC_002947/1311628‑1311923                                                                                                                                                       |                                                                                                                                                     cTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGC                                                                                                                                                      <  7:374337‑M1/149‑1 (MQ=255) cTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGC                                                                                                                                                      <  3:28038‑M1/149‑1 (MQ=255)  tAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCCCGAAGCATACACAGCGGGGGATGCCACCGGCGTTTCCGGGGGTggcgggcg                                                                                                                                                     >  2:92769/1‑149 (MQ=255)    aTGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTg                                                                                                                                                   <  1:92769/149‑1 (MQ=255)     tGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGc                                                                                                                                                  <  2:88474/149‑1 (MQ=255)     tGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGc                                                                                                                                                  >  4:297893/1‑149 (MQ=255)       gCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAAGTAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGcc                                                                                                                                                 >  1:94891/1‑149 (MQ=255)        cacaATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGAAAAAACAGCCGAGGCTTGCACCCGCTTTTGCGGGGTTTGCCGGCGTGgccc                                                                                                                                               >  3:205820/1‑148 (MQ=255)         acaATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATACACGGCCGTGGATTGCACCGGCGTTTCCGGTGTTAGCCGGCGGGCCCGc                                                                                                                                              >  1:81025/1‑149 (MQ=255)           aaTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTc                                                                                                                                            >  5:116041/1‑149 (MQ=255)           aaTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTc                                                                                                                                            <  4:114140/149‑1 (MQ=255)           aaTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCATAATGCCTTCATGTGGGAGCGGGCGC‑GCCCGCGAAGCAACCCCTGGGGGGGATGCCACCGCGGTTGCCGGGGTGAGCGGGGGGGCCCCCTc                                                                                                                                            >  8:172461/1‑149 (MQ=255)            aTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTcc                                                                                                                                           <  3:297893/149‑1 (MQ=255)               aTTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCca                                                                                                                                         <  3:48428/148‑1 (MQ=255)                              ttATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGGCCCCCGAA‑CATACACAGGGGGTGATTGCACCCGCGTTTGCAGTGTTTGGGGGGGTGGACCCGCCAACAAAGGggggcggggc                                                                                                                         >  1:165680/1‑149 (MQ=255)                                   aatCCAATGGAAGTTAGTAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGGGGGCGA‑GCCCGCTAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTgcgc                                                                                                                   <  4:205820/147‑1 (MQ=37)                                      ccAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTag                                                                                                                <  1:302376/149‑1 (MQ=255)                                            gCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATACACTGCGGGGGATGCCCCCCGCGTTGGCGGTGTTCGGGGGCGGGCCCGCGCCCCC‑AACGGGGGCGGGGCCGGGGCGagcccccc                                                                                                          >  1:366362/1‑145 (MQ=255)                                                    caa‑taatTTTGGGGCCATATTGCCTTCTTGTGGGTGGGGGGTC‑GCCCGGTAAGCATCCATTGGGGTGGATGCCACGGGTTTTGCGGGTTTTGGCGGGGGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAg                                                                                                     <  2:165680/145‑1 (MQ=255)                                                        tAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCCCGAAGCAACCACATCGGTGGATTCCACCCGCATTTACCGTTTTACCCGGCCTTCCCCCTCCCAC‑AAAAGGCCCGGGGCCTGCGCTATCccaccaccacccccc                                                                                                >  4:112715/1‑142 (MQ=255)                                                                gggCCCTAATGCCTTCCCGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCt                                                                                        <  1:150080/148‑1 (MQ=255)                                                                 ggCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTc                                                                                      <  3:215028/149‑1 (MQ=255)                                                                   cccTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCa                                                                                    <  4:67241/149‑1 (MQ=255)                                                                   cccTAATGCCTTCCTGGGGGAGCGGCCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCa                                                                                    <  3:397938/149‑1 (MQ=255)                                                                       aaTGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGgcg                                                                                >  1:56420/1‑149 (MQ=255)                                                                         tGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCa                                                                              <  6:116041/149‑1 (MQ=255)                                                                           ccTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAg                                                                             <  5:191315/148‑1 (MQ=255)                                                                               ccTGTGGGAGCGGGCGA‑GCCCGGGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcg                                                                         <  3:7688/148‑1 (MQ=255)                                                                               ccTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcg                                                                         <  2:56420/148‑1 (MQ=255)                                                                               ccTGGGGGAGGGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGggcg                                                                         <  7:7723/148‑1 (MQ=255)                                                                                 tgtgGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGGTGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCCGCCACCCGCACGCGCATGGCTTCCAGGGGCAGGGCGGcc                                                                      >  7:104523/1‑149 (MQ=37)                                                                                        gCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCa                                                               <  2:94891/149‑1 (MQ=255)                                                                                              gA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTg                                                         >  2:274785/1‑149 (MQ=255)                                                                                                  cccGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCa                                                      <  2:377405/149‑1 (MQ=255)                                                                                                   ccGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGc                                                                                                                                              >  6:149330/1‑61 (MQ=255)                                                                                                   ccGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGc                                                                                                                                              <  5:149330/61‑1 (MQ=255)                                                                                                   ccGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCtt                                                                    <  4:209437/134‑1 (MQ=255)                                                                                                   ccGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCtt                                                                    >  3:209437/1‑134 (MQ=255)                                                                                                   ccGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCaagcccgctcccacagggtgaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcat                                                          >  6:254690‑M1/1‑53 (MQ=255)                                                                                                   ccGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCaagcccgctcccacagggtgaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcat                                                          <  5:254690‑M1/145‑93 (MQ=255)                                                                                                    cgcgAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCt                                                                                        <  5:326165/113‑1 (MQ=255)                                                                                                    cgcgAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCt                                                                                        >  6:326165/1‑113 (MQ=255)                                                                                                    cgcgAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCaagcccgctcccacagggtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgcctt                                                     >  2:22485‑M1/1‑52 (MQ=255)                                                                                                            aTCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTc                                            >  5:397625/1‑149 (MQ=255)                                                                                                                aCTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCgcgc                                        >  5:380458/1‑149 (MQ=255)                                                                                                                aCTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCgcgc                                        >  8:376593/1‑149 (MQ=255)                                                                                                                         gATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTgtgc                               <  2:366362/149‑1 (MQ=255)                                                                                                                          aTGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCa                              <  6:397625/149‑1 (MQ=255)                                                                                                                           tGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGGCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGGCGCTTGCGCAg                             >  7:179404/1‑149 (MQ=255)                                                                                                                             gcaCCGGCTTTGCCGGTGTTCGCGGGCaagcccgctcccacagggtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgccacatccacggcctc                            >  5:382706‑M1/2‑27 (MQ=255)                                                                                                                             ccACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAgg                            <  3:112715/148‑1 (MQ=255)                                                                                                                              cACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCCC‑AAGGGGCGCGGGGCCTGCGCTAGCCCGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGc                          >  2:209582/1‑149 (MQ=255)                                                                                                                              cACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGc                          >  8:69462/1‑149 (MQ=255)                                                                                                                               aCCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCg                         >  1:156716/1‑149 (MQ=255)                                                                                                                                 cGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGCCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTc                       >  4:289974/1‑149 (MQ=255)                                                                                                                                   gCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGa                     <  2:156716/149‑1 (MQ=255)                                                                                                                                        gCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCCGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCg                >  6:308144/1‑149 (MQ=255)                                                                                                                                         ccGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCg                <  7:172461/148‑1 (MQ=255)                                                                                                                                         ccGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGc               <  7:69462/149‑1 (MQ=255)                                                                                                                                             tgtTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCACGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATg                                                                                           <  7:380712/69‑1 (MQ=255)                                                                                                                                             tgtTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCACGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATg                                                                                           >  8:380712/1‑69 (MQ=255)                                                                                                                                                 cgcgGGCaagcccgctcccacagggtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatcttggcagcgtactc          <  7:171857‑M1/147‑141 (MQ=255)                                                                                                                                                  gcgGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCa          >  6:226445/1‑145 (MQ=255)                                                                                                                                                  gcgGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCa          <  5:226445/145‑1 (MQ=255)                                                                                                                                                       caagcccgctcccacagggtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatcttggcagcgtactcacgcactt  >  2:175605‑M1/1‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                     CTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAA‑TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGA‑GCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCAC‑AAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACT  >  NC_002947/1311628‑1311923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.