New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1311776	52 (0.800)	4 (0.070)	3/246	NT	9.6%	intergenic (‑244/+34)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
	?	NC_002947	5594166 =	27 (0.450)					intergenic (‑113/+32)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase

GATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTT  >  NC_002947/5594020‑5594313                                                                                                                                                   |                                                                                                                                                       gATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGGTTTGCCGGGCACACCGGGAAAGCCGGTGCCATTCAACGCATGTCTTTGTTTGCGGGCAAg                                                                                                                                                      >  1:401728/1‑149 (MQ=255)  atgggagggAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGc                                                                                                                                                     <  3:248309/143‑1 (MQ=255)  aTGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGc                                                                                                                                                     <  7:285778/149‑1 (MQ=255)     gTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCg                                                                                                                                                  >  1:121829/1‑149 (MQ=255)     gTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCg                                                                                                                                                  >  4:125191/1‑149 (MQ=255)       cGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCt                                                                                                                                                <  3:125191/149‑1 (MQ=255)        gggAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCt                                                                                                                                                <  2:121829/148‑1 (MQ=255)        gggAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTc                                                                                                                                               >  8:98884/1‑149 (MQ=255)        gggAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTc                                                                                                                                               <  7:98884/149‑1 (MQ=255)           agagaACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACAACCGCAAAGCCGGTGACATGCACCGCAGTGCTTGCTTCGCCGGCAAGCCCGCTCCca                                                                                                                                            >  7:96704/1‑149 (MQ=255)            gagaAGTGGCTGGGGGTTGTCATGGTCTTGTCGGCTGGTGTGTTTTTATGTGGCATACACCACCGTGTGGGAGGGGGCTTGCCGGCGAACAGGGGCAATGCGGGTGCCTTGCCCGGATTTGGTTGCTTCGCGGGCAAGCCCGCTCCca                                                                                                                                            <  8:96704/148‑1 (MQ=255)                                 atggacatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGGGGGAGCGGGCGTGCCCGCGAACACCGGCAACGCCGGTGCCATGCACCGCATTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTa                                                                                                                      <  3:244100/149‑1 (MQ=37)                                            ctctggAGTTATGTTAAGTGGCATACACCACCCTGTGGGAGGGGGCTTGCCCGCTAACAGGGGCAATGCCGGTGCCATGCACCGCTGTGCTTGCTTCGCGGGCATGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTgg                                                                                                          <  2:57357/144‑1 (MQ=37)                                               aGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCCCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTgg                                                                                                          >  1:57357/1‑145 (MQ=255)                                                                                gggAGCGGGCGTGGCCCCGCACACCGGCAAAGCCGGTGCCATGCACCGCCGTGCTTGCTTAGCGGGCAAGCCCGCGCCCCCAGGGTAAGGTGGTGCGGGTTTTACTTT‑‑GTGG‑TACAGCTGGCTGCCATACAGGCGGAACCCCTAGGc                                                                      >  6:49180/1‑147 (MQ=21)                                                                                          ttGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGtggt                                                                                                                                   <  2:342657/79‑4 (MQ=255)                                                                                          ttGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGtggt                                                                                                                                   >  1:342657/1‑76 (MQ=255)                                                                                          ttGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTTGGGGGAGACAGCTGGCTGCCTTCCTCGCGGAACCGCTCGGCCTGCTCACg                                                             >  1:339460/1‑149 (MQ=25)                                                                                          ttGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCAt                                                          >  5:76144/1‑149 (MQ=255)                                                                                              ccgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcAAGCCCGCTCCCACAGGGTGAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCAt                                                          <  5:254690‑M2/92‑1 (MQ=255)                                                                                              ccgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcAAGCCCGCTCCCACAGGGTGAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCAt                                                          >  6:254690‑M2/54‑145 (MQ=255)                                                                                              ccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCt                                                      >  8:49772/1‑149 (MQ=255)                                                                                               cgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCtt                                                     >  2:22485‑M2/53‑149 (MQ=255)                                                                                                gcgAACACCGGCAAAGCCAGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTg                                                                                     >  5:223559/1‑116 (MQ=255)                                                                                                gcgAACACCGGCAAAGCCAGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTg                                                                                     <  6:223559/116‑1 (MQ=255)                                                                                                      acCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGAc                                              >  8:190158/1‑149 (MQ=255)                                                                                                            aaaGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTca                                         >  8:171857/1‑148 (MQ=255)                                                                                                              aGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACAt                                      >  2:239885/1‑149 (MQ=255)                                                                                                                   gTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACg                                 >  7:102533/1‑149 (MQ=255)                                                                                                                   gTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACg                                 >  3:91307/1‑149 (MQ=255)                                                                                                                       cATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCt                             >  2:180885/1‑149 (MQ=255)                                                                                                                        gcaccggctttgccggtgttcgcgggcAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGCCACATCCACGGCCTc                            >  5:382706‑M2/28‑149 (MQ=255)                                                                                                                              cGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCtt                      >  8:205451/1‑149 (MQ=255)                                                                                                                              cGCAGTGCTTGCTTCGCGGCCAAGCCCCCTCCCACAGGGTAAGGTGCTGCGGTTTAGCCTTT‑‑GTGG‑TACAGCTGGATGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCGTTGCACGACCGTCACATCCCCGGCCTCGATc                        >  2:273850/1‑147 (MQ=255)                                                                                                                                         cttCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTAc            <  8:102533/148‑1 (MQ=255)                                                                                                                                         cttCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTAc            <  4:91307/148‑1 (MQ=255)                                                                                                                                            gcggtgaaaGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTTG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCAc        <  2:401728/142‑1 (MQ=255)                                                                                                                                            cgcgggcAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTc          <  7:171857‑M2/140‑1 (MQ=255)                                                                                                                                                  cAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACtt  >  2:175605‑M2/2‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                       GATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTT‑‑GTGG‑TACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTT  >  NC_002947/5594020‑5594313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.