New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1531769	6 (0.090)	3 (0.060)	3/216	NT	22.3%	coding (107/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	= 1531817	16 (0.300)					coding (59/630 nt)	PP_1344	hypothetical protein

CTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTA  >  NC_002947/1531621‑1531914                                                                                                                                                     |                                                                                                                                                  cTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCCGGGCGTAAGGTGGCGGGGGGGGGTCGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGG                                                                                                                                                   <  3:128629‑M1/149‑1 (MQ=255)   ggTTCAGCAGCAGGCGCCGCGGGCGCACCTGGCGCAGCAGGCCGGAAGGCGGCGGGGCGGGGGCGGGTTTGTCGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCggggg                                                                                                                                                 <  2:37712/149‑1 (MQ=255)          ccccagGCGCTGGGGGCGCACCGGGCGCAGCCGGGGTCTTGGGGGGGGGGCGGGGGTGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGc                                                                                                                                          <  4:134411/146‑1 (MQ=255)                      cGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGt                                                                                                                              >  7:44703/1‑149 (MQ=255)                          cgcACCGGGCGCTGCTGGGCGCCCGGGGGCGGGGCGGGGGTGGCTTTGTAGCCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATc                                                                                                                          <  6:361955/149‑1 (MQ=37)                                              ggcagggGGCTGGGCGGGGGCGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGtgaacccgctcctacaagataccgataaccctggcaggagcgggt                                                                                                      <  6:161194‑M1/146‑46 (MQ=255)                                                  ggTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCa                                                                                                   <  8:44703/148‑1 (MQ=255)                                                   gTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGtt                                                                                                                             >  3:56117/1‑121 (MQ=255)                                                     ggCTGGGCGGGG‑AGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTTAcccgc                                                                                              >  1:49952‑M2/1‑144 (MQ=255)                                                                ggAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGtgaacccgctcctacaagataccgataaccctggcaggagc                                                                                                          >  2:151065‑M1/1‑86 (MQ=255)                                                                ggAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGtgaacccgctcctacaagataccgataaccctggcaggagc                                                                                                          <  1:151065‑M1/127‑42 (MQ=255)                                                                               cATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccgc                                                                                              <  3:364047‑M2/124‑6 (MQ=255)                                                                               cATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCAcccgc                                                                                              >  4:364047‑M2/1‑119 (MQ=255)                                                                                                                                                cgcgGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATc    >  7:90705/1‑149 (MQ=255)                                                                                                                                                 gcgGGtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatg                            <  3:364047‑M1/124‑120 (MQ=255)                                                                                                                                                 gcgGGtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatg                            >  4:364047‑M1/1‑5 (MQ=255)                                                                                                                                                 gcgGGtaaacccgctcctacaagataccgataaccctggcaggagcgggttcccccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggcctacaaaccctccccgcccagcc   >  1:49952‑M1/1‑5 (MQ=255)                                                                                                                                                   gggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTa  >  7:380183/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CTGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTA  >  NC_002947/1531621‑1531914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.