| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1725387 = | 50 (0.770) | 5 (0.080) | 5/256 | NT | 9.9% | coding (214/399 nt) | PP_1519 | lipoprotein |
| ? | NC_002947 | 1725428 = | 43 (0.680) | coding (173/399 nt) | PP_1519 | lipoprotein | |||||
TCACTGCCATCGAGCGCGACACCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAG > NC_002947/1725242‑1725522 | tCACTGCCATCGAGCGCGACACCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGcc > 8:276672/1‑149 (MQ=255) aCTGCCATCGAGCGCGACACCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCt < 1:219372/148‑1 (MQ=255) tGCCATCGAGCGCGACACCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCttt > 2:228258/1‑148 (MQ=255) ccATCGAGCGCGACACCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGAc < 7:107519/149‑1 (MQ=255) gtgACACCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGggccggc < 2:262704/147‑1 (MQ=255) cgACACCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGtt < 6:178976/130‑1 (MQ=255) cgACACCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGtt > 5:178976/1‑130 (MQ=255) cctgctccagccaaaccccacccaaccaggccagcctggacggtgaagtcttctacctgcagcgcattgccctgccgcctgccgccaccctgagcgtggaactgcaggatgtgtcgctgatggacgccccTGCCTTTGACCGggccggc < 7:347672‑M1/19‑1 (MQ=255) ttCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAggg < 3:56256/149‑1 (MQ=255) ttCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAgg < 7:276672/148‑1 (MQ=255) aTTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACgg > 3:37512/1‑149 (MQ=255) ttGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACgg > 3:94933/1‑148 (MQ=255) gatgaACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTg < 8:340370/129‑1 (MQ=255) gatgaACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTg > 7:340370/1‑129 (MQ=255) atgaACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGggccgg < 5:180893/124‑1 (MQ=255) atgaACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGggccgg > 6:180893/1‑124 (MQ=255) tgaACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGGCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTCTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAggg < 3:390072/149‑1 (MQ=255) gaACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGtt < 2:326791/105‑1 (MQ=255) gaACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGtt > 1:326791/1‑105 (MQ=255) gaACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAgggg > 7:30699/1‑149 (MQ=255) ccaggccagcctggacggtgaagtcttctacctgcagcgcattgccctgccgcctgccgccaccctgagcgtggaactgcaggatgtgtcgctgatggacgccccTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAggg > 7:62522‑M1/106‑149 (MQ=255) aggccagcctggacggtgaagtcttctacctgcagcgcattgccctgccgcctgccgccaccctgagcgtggaactgcaggatgtgtcgctgatggacgccccTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGc > 8:347672‑M1/104‑149 (MQ=255) cAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGt > 1:388353/1‑149 (MQ=255) aGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTc < 8:155747/149‑1 (MQ=255) cTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCa < 6:333367/149‑1 (MQ=255) cATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGa > 4:108969/1‑148 (MQ=255) aTTCAGCTCAATGCGCGCACTTACCGCATAGCGGTCGC‑CAGGCTTGACCTGCGAGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGaca > 3:37743/1‑149 (MQ=255) tCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGCTCAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGaca > 1:271658/1‑148 (MQ=255) tgaagtcttctacctgcagcgcattgccctgccgcctgccgccacccttagcgtggaactgcaggatgtgtcgctgatggacgccccTGcc > 8:241819‑M1/88‑91 (MQ=255) tgaagtcttctacctgcagcgcattgacctgccgcctgacgccaccctgagcgtggaactgcaggatgtgtcgctgatggacgccccTGcc < 7:241819‑M1/4‑1 (MQ=255) cTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCt > 6:349837/1‑149 (MQ=255) cTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACCGCAGGGGCGTCCATCAGCGACACATCCt < 1:228258/149‑1 (MQ=255) cTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCACCGGCACGTTGCCATTGACCGCGCCGGCCGGGCGCGCCAGGGTCCCGGCAGGGGCGGCCATCACCGCCCCATc > 4:278102/1‑147 (MQ=255) aaTGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTg < 4:233116/147‑1 (MQ=255) ttctacctgcagcgcattgccctgccgcctgccgccaccctgagcgtggaactgcaggatgtgtcgctgatggacgccccTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGc > 1:313042‑M1/81‑120 (MQ=255) ttctacctgcagcgcattgccctgccgcctgccgccaccctgagcgtggaactgcaggatgtgtcgctgatggacgccccTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGc < 2:313042‑M1/40‑1 (MQ=255) gcgcgcACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGGCCAACAGCGACACAGCCAGCAGt > 4:174663/1‑148 (MQ=255) cgcACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCa < 4:94933/149‑1 (MQ=255) ttACCGCATAGCGGTGGA‑CACGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGCCAGCGGCACGTTGACTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCt > 6:173428/1‑148 (MQ=255) cATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTg > 6:286169/1‑149 (MQ=255) aGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTggcg > 1:162585/1‑149 (MQ=255) cGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAg < 6:22394/128‑1 (MQ=255) cGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAg > 5:22394/1‑128 (MQ=255) c‑cAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGGCCGTCAGCGACACATCCTGCAGTTCCCCGCAGAGGGTggggggcggggg > 8:152050/1‑142 (MQ=255) cAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTggcggcaggcgg > 5:191156/1‑148 (MQ=255) cAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTggcggcaggcgg > 3:78730/1‑148 (MQ=255) aGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTggcggcaggcggca < 8:30699/149‑1 (MQ=255) ggCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGgcggcaggcggcag < 3:174663/149‑1 (MQ=255) gCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGcggcaggcggcagg > 3:41375/1‑149 (MQ=255) cgtGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCTGGGTCACGGCAGGGGCGTCGATCAGCGACTCATCCTGCAGTTCCACGCTCTGGGTGGCGGCAGGCGGCAggg < 7:152050/147‑1 (MQ=255) cTTGTCCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAggg < 2:388353/149‑1 (MQ=255) ccTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATg < 3:108969/149‑1 (MQ=255) cgGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGc < 5:286169/149‑1 (MQ=255) ggTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAgg < 5:101583/149‑1 (MQ=255) aTAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGttg > 6:72490/1‑146 (MQ=255) gaTGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCa > 2:408899/1‑149 (MQ=255) tGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCAcc < 4:78730/149‑1 (MQ=255) ggAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCg > 7:263300/1‑149 (MQ=255) aaCGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTc > 2:282387/1‑149 (MQ=255) cGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTc > 8:374789/1‑147 (MQ=255) ggCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAg < 6:191156/149‑1 (MQ=255) cGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCt > 6:233238/1‑87 (MQ=255) cGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCt < 5:233238/87‑1 (MQ=255) | TCACTGCCATCGAGCGCGACACCGTGGTGTTCGGTATTGATGAACAGCAACTTGCCATTCAGCTCAATGCGCGCACTTACCGCATAGCGGTGGC‑CAGGCTTGACCTGCGCGGGGTCATAGGTGAGATGGAACGGCAGCGGCACGTTGCCTTTGACCGGGCCGGCCTGGCGCGCCAGGGTCACGGCAGGGGCGTCCATCAGCGACACATCCTGCAGTTCCACGCTCAGGGTGGCGGCAGGCGGCAGGGCAATGCGCTGCAGGTAGAAGACTTCACCGTCCAG > NC_002947/1725242‑1725522 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |