New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2236934	31 (0.480)	9 (0.160)	9/232	NT	26.0%	intergenic (+29/+99)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
	?	NC_002947	= 2236993	24 (0.420)					intergenic (+88/+40)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter

AAGCGCATCAAGCAGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGC  >  NC_002947/2236786‑2237081                                                                                                                                                     |                                                                                                                                                    aaGCGCATCAAGCAGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGC                                                                                                                                                     <  8:47919‑M1/149‑1 (MQ=255)     gcATCAAGCTGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGAGCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGTTTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGc                                                                                                                                                 <  7:141481/149‑1 (MQ=255)             cAGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCgaag                                                                                                                                         <  5:49554/149‑1 (MQ=255)               gTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCgaagaa                                                                                                                                       >  3:371272/1‑149 (MQ=255)                ttGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAAt                                                                                                                                      >  1:152618/1‑149 (MQ=255)                ttGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAAt                                                                                                                                      <  6:311689/149‑1 (MQ=255)                    aaGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCaa                                                                                                                                  <  5:15592/149‑1 (MQ=255)                     agagAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGAGCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCaa                                                                                                                                  <  2:101665/148‑1 (MQ=255)                         aaaaTGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCgg                                                                                                                             <  7:73702/149‑1 (MQ=255)                           aaTGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCatgcccgcgaacaccggcgcagccgg                                                                                                                           >  2:404349‑M1/1‑123 (MQ=255)                               atgCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGtggctg                                                                                                                       >  6:146433/1‑149 (MQ=255)                                tgCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGTTCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGtggctg                                                                                                                       >  1:129058/1‑148 (MQ=255)                                tgCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGtggctg                                                                                                                       <  2:129058/148‑1 (MQ=255)                                 ggaGTTCGCGCGCGACGTGGAGTTCGTAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAAcg                                                                                                                                <  4:200947/136‑1 (MQ=255)                                 gCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAAcg                                                                                                                                >  3:200947/1‑138 (MQ=255)                                     ttCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCg                                                                                                                 <  5:146433/149‑1 (MQ=255)                                           cgcgACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCac                                                                                                                                                   >  6:376951‑M1/1‑107 (MQ=255)                                            gcgACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTgcgc                                                                                                          <  1:351543/149‑1 (MQ=255)                                               aCCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCgg                                                                                                       <  4:371272/149‑1 (MQ=255)                                                ccTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGgt                                                                                                      <  2:152618/149‑1 (MQ=255)                                                ccTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGgt                                                                                                      <  5:254729/149‑1 (MQ=255)                                                    gAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCatgcccgcgaacaccggcgcagccggtgccagccaccgcgttgaattcttc                                                                                                  <  1:404349‑M1/149‑52 (MQ=255)                                                      gTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCACCGGTGTTcgc                                                                                                <  8:205851/149‑1 (MQ=255)                                                          gAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCggg                                                                                             <  5:314960/148‑1 (MQ=255)                                                          gAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAAATCAACTCGATCGCTGGCACCCGCTGCGCCCGTGTTCGCggg                                                                                             >  8:177680/1‑148 (MQ=38)                                                            aGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCatgcccgcgaacaccggcgcagccggtgccagccaccgcgttgaattcttcgcgggcac                                                                                          <  4:370600‑M1/149‑60 (MQ=255)                                                              cTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGTCCCTGTGGGAGCGGGCatgcccgcgaacaccggcgcagccggtgccagccaccgcgttgaattcttcgcgggcacgc                                                                                        <  4:145992‑M1/149‑62 (MQ=255)                                                              cTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCggg                                                                                             >  2:203899/1‑144 (MQ=255)                                                              cTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCggg                                                                                             <  1:203899/144‑1 (MQ=255)                                                                  ggcgCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGTGCGGTCCCTGTGGGAGCGGGCatgcccgcgaacaccggcgcagccggtgccagccaccgcgttgaattcttcgcgg                                                                                              <  5:317326‑M1/139‑56 (MQ=255)                                                                  ggcgCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGTGCGGTCCCTGTGGGAGCGGGCatgcccgcgaacaccggcgcagccggtgccagccaccgcgttgaattcttcgcgg                                                                                              >  6:317326‑M1/1‑84 (MQ=255)                                                                   gcgcAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCatgcccgcgaacaccggcgcagccggtgccagccaccgcgtt                                                                                                           <  8:12914‑M1/125‑43 (MQ=255)                                                                   gcgcAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCatgcccgcgaacaccggcgcagccggtgccagccaccgcgtt                                                                                                           >  7:12914‑M1/1‑83 (MQ=255)                                                                                aCGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGTCCCTGTGGGAGCGGGCatgcccgcgaacaccggcgcagccggtgccagccaccgcgttgaattcttcgcgggcacgcccgctcccacagggccc                                                                       <  6:238244‑M1/148‑79 (MQ=255)                                                                                                 cGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAg                                                     >  6:129674/1‑149 (MQ=255)                                                                                                            gATCAGCAGCTGAAGCCGGGCGCGGGCCCATTGGGGTCCGGCGTGCCCGCGAAGAATTAAACGACGTGGCAGGCACCCGCAGCGCCGGTGTTAGCCGGCCATCCCCCACCCACAACGCCCCCAACTGAAAAGTAATAACCTAAATGGGc                                          >  4:172413/1‑149 (MQ=255)                                                                                                             aTCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCTGGCGTGCCCGCGAAGAATTCAACGCGTTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGc                                          <  7:177680/148‑1 (MQ=255)                                                                                                                agcagcTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGAcc                                                                       <  3:10241/116‑1 (MQ=255)                                                                                                                   agcTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCa                                   <  3:172413/149‑1 (MQ=255)                                                                                                                       gAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCt                               >  3:134443/1‑149 (MQ=255)                                                                                                                                   gggCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATgcccgctcccacagggaccgcgcccggcttcagctgctgatcaaccgctcccgcagctgcgcaatctcgt                    <  6:238244‑M2/148‑71 (MQ=255)                                                                                                                                        cTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAAc              >  2:99748/1‑149 (MQ=255)                                                                                                                                            gggAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGc          <  5:129674/149‑1 (MQ=255)                                                                                                                                             ggAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCg         <  4:134443/149‑1 (MQ=255)                                                                                                                                                    gCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATgcccgctcccacagggaccgcgcccggcttcagctgctgatcaaccgctcccgcagctgcgcaatctcgtcacgcaactgcgccgcag  <  4:145992‑M2/149‑89 (MQ=255)                                                                                                                                                    gCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCACAGCCTTCAACCCTTCCGGCAACTTGc          <  3:298757/141‑1 (MQ=255)                                                                                                                                                    gCGTGCCAGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGCAACGCAACTGAAATGTAATAGCATCAATGCCCTTCCACACCCTTCAACCCTTCCGGCAACTTGCgagatcc   >  4:298757/1‑142 (MQ=21)                                                                                                                                                     |                                                                                                                                                    AAGCGCATCAAGCAGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGC  >  NC_002947/2236786‑2237081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.