| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2236934 | 31 (0.480) | 9 (0.160) | 9/232 | NT | 26.0% | intergenic (+29/+99) | uvrB/PP_1975 | uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter |
| ? | NC_002947 | = 2236993 | 24 (0.420) | intergenic (+88/+40) | uvrB/PP_1975 | uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter | |||||
CGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGTGGAAGGCATCGTTG > NC_002947/2236882‑2237138 | cGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAg > 6:129674/1‑149 (MQ=255) gATCAGCAGCTGAAGCCGGGCGCGGGCCCATTGGGGTCCGGCGTGCCCGCGAAGAATTAAACGACGTGGCAGGCACCCGCAGCGCCGGTG‑TTAGCCGGCCATCCCCCACCCACAACGCCCCCAACTGAAAAGTAATAACCTAAATGGGc > 4:172413/1‑149 (MQ=255) aTCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCTGGCGTGCCCGCGAAGAATTCAACGCGTTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGc < 7:177680/148‑1 (MQ=255) agcagcTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGAcc < 3:10241/116‑1 (MQ=255) agcTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCa < 3:172413/149‑1 (MQ=255) gAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCt > 3:134443/1‑149 (MQ=255) gggCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATgcccgctcccacagggaccgcgcccggcttcagctgctgatcaaccgctcccgcagctgcgcaatctcgt < 6:238244‑M2/148‑71 (MQ=255) cTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAAc > 2:99748/1‑149 (MQ=255) gggAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGc < 5:129674/149‑1 (MQ=255) ggAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCg < 4:134443/149‑1 (MQ=255) gCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATgcccgctcccacagggaccgcgcccggcttcagctgctgatcaaccgctcccgcagctgcgcaatctcgtcacgcaactgcgccgcag < 4:145992‑M2/149‑89 (MQ=255) gCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCACAGCCTTCAACCCTTCCGGCAACTTGc < 3:298757/141‑1 (MQ=255) gCGTGCCAGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGCAACGCAACTGAAATGTAATAGCATCAATGCCCTTCCACACCCTTCAACCCTTCCGGCAACTTGCgagatcc > 4:298757/1‑142 (MQ=21) gTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATgcccgctcccacagggcccgcgcccggcttcagctgctgatcaaccgctcccgcagctgcgcaatctcgtcacgcaactgcgccgcagct < 4:370600‑M2/149‑91 (MQ=255) cccGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTa < 8:295682/89‑1 (MQ=255) cccGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTa > 7:295682/1‑89 (MQ=255) ccGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATgcccgctcccacagggaccgcacccggcttcagctgctgatcaaccgctcccgcagctgcgcaatctcgtcacgcaactgcgcc > 6:317326‑M2/1‑55 (MQ=255) ccGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATgcccgctcccacagggaccgcacccggcttcagctgctgatcaaccgctcccgcagctgcgcaatctcgtcacgcaactgcgcc < 5:317326‑M2/139‑85 (MQ=255) gaagaaTTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATgcccgctcccacagggcccgcgcccggcttcagctgctgatcaaccgctcccgcagctgcgcaatctcgtcacgcaactgcgccgcagcttcgaactc < 1:404349‑M2/149‑99 (MQ=255) gaaTTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATTTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGccacca < 3:389287/149‑1 (MQ=255) ttCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATg > 4:233887/1‑148 (MQ=255) ttCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGc > 8:293533/1‑149 (MQ=255) tCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCt > 1:269966/1‑149 (MQ=255) aaCGCGGTGGCTGGCACCGGCTGCGCCGGTGTTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTca > 1:254649/1‑129 (MQ=255) aaCGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATgcccgctcccacagggcccgcgcccggcttcagctgctgatcaaccgctcccgcagctgcgcaatctcgtcacgcaactgcgc > 7:12914‑M2/1‑42 (MQ=255) aaCGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATgcccgctcccacagggcccgcgcccggcttcagctgctgatcaaccgctcccgcagctgcgcaatctcgtcacgcaactgcgc < 8:12914‑M2/125‑84 (MQ=255) aaCGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTca < 2:254649/128‑1 (MQ=255) aaCGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCAAGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCGTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCAACATGCTcc > 2:62381/1‑148 (MQ=255) aCCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCAcc < 4:317254/121‑1 (MQ=255) ccGGCTGCGCCGGTG‑TTCGCGGGCATgcccgctcccacagggcccgcgcccggcttcagctgctgatcaaccgctcccgcagctgcgcaatctcgtcacgcaactgcgccgcagcttcgaactccaggtcgcgggcgaactgcatcatt > 2:404349‑M2/1‑26 (MQ=255) cgcCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACaaa < 3:233887/148‑1 (MQ=255) cgcCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACaaa < 7:293533/148‑1 (MQ=255) gcCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGt > 2:65132/1‑149 (MQ=255) gcCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCAGCTCCCGACAAAGt > 8:79383/1‑149 (MQ=255) gCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGTGGAAGGCATCGTTg > 8:303209/1‑149 (MQ=255) gtgcccgctcccacagggcccgcgcccggcttcagctgctgatcaaccgctcccgcagctgcgcaatctcgtcacgcaactgcgccgcagcttcgaactccaggtcgcg > 6:376951‑M2/2‑2 (MQ=255) | CGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTG‑TTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGTGGAAGGCATCGTTG > NC_002947/2236882‑2237138 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |